Bibliografija osebe. Seznam zajema vsa gradiva in ne le tista, kje je oseba mentor.

Doktorska dela (11)

1. Nataša Toplak: Preučevanje molekularnih mehanizmov odpornosti proti virusu PVY [zgoraj] NTN v gensko spremenjenih rastlinah krompirja (Solanum tuberosum L.) sorte `Igor`
2. Mitja Mahnič: Uporaba genomike in proteomike pri analizi dejavnikov nastanka neklasičnih inkluzijskih teles v bakteriji Escherichia coli
3. Klemen Zupančič: Analiza glioblastoma s pristopi sistemske biologije
4. Uroš Jamnikar: Transkriptomska analiza stabilnosti proizvodnih klonov celic ovarijev kitajskega hrčka (CHO)
5. Živa Ramšak: Pristopi k analizi različnih tipov podatkov za boljše razumevanje obrambnega odziva krompirja (Solanum tuberosum L.) na virusne okužbe
6. Jana Vojvoda: Letna dinamika in raznolikost amonij-oksidirajočih arhej in bakterij v obalnem morju Tržaškega zaliva
7. Ana Lazar: Vloga genov, vključenih v signalizacijsko pot proteinskih kinaz, pri okužbi krompirja (Solanum tuberosum L.) s krompirjevim virusom Y
8. Ana Herman: Mikro RNA v plazemskih vzorcih zdravih oseb in bolnikov z malignim gliomom
9. Tjaša Stare: Proučevanje dinamike odziva krompirja (Solanum tuberosum L.) na okužbo s krompirjevim virusom Y na ravni transkriptoma in drugih fizioloških dejavnikov
10. Marjanca Blas: Analiza transkriptoma producirajočih in neproducirajočih celičnih linij ovarija kitajskega hrčka
11. Ida Šmid: Vnos izbranih glivnih genov za odpornost krompirja (Solanum tuberosum L.) proti koloradskemu hrošču

Magistrska dela (4)

1. Kristina Gruden: Interaktivni priročnik z likovnim dnevnikom kot podpora vzgoji, usmerjeni h krepitvi osebnostne, družbene in učne kompetence
2. Maja Križnik: Vloga malih RNA (miRNA) pri odgovoru rastlin krompirja (Solanum tuberosum L.) na okužbo s krompirjevim virusom Y
3. Katja Guček: Tarčna mutageneza mikrospor oljne ogrščice (Brassica napus L.) s tehnologijo CRISPR/Cas9
4. Tamara Polajžer: Študij delovanja promotorjev genov PR1b in TGA2 iz krompirja

Diplomska dela (5)

1. Kristina Košmrlj: Optimizacija postopkov prehodne transformacije celične kulture tobaka BY-2 z uporabo sporočilnega gena za zeleno fluorescirajoči protein
2. Miha Svalina: Razvoj podatkovne baze za poskuse z DNA-mikromrežami
3. Kristina Gruden: Prenova celostne grafične podobe vinske blagovne znamke Škerjanec
4. Katja Stare: Proučevanje proteoma listov krompirja (Solanum tuberosum L.) kot orodja za ocenjevanje varnosti transgenih rastlin
5. Marko Chersicola: Anotacija in sekvenčna analiza genov, udeleženih v post-transkripcijkem utišanju pri krompirju (Solanum tuberosum L.)

Druga dela (38)

1. Marina Dermastia, Blaž Škrlj, Rebeka Strah, Barbara Anžič, Špela Tomaž, Maja Križnik, Christina Schönhuber, Monika Riedle-Bauer, Živa Ramšak, Marko Petek, Aleš Kladnik, Nada Lavrač, Kristina Gruden, Thomas Roitsch, Günter Brader, Maruša Pompe Novak: Differential response of grapevine to infection with ʼCandidatus Phytoplasma solaniʼ in early and late growing season through complex regulation of mRNA and small RNA transcriptomes
2. Katarina Cankar, Valerie Chauvensy-Ancel, Marie-Noelle Fortabat, Kristina Gruden, André Kobilinsky, Jana Žel, Yves Bertheau: Detection of non-authorized genetically modified organisms using differential quantitative polymerase chain reaction: application to 35S in maize
3. Mojca Milavec, Kristina Gruden, Maja Ravnikar, Maja Kovač: Peroxidases in the early responses of different potato cultivars to infection by potato virus YNTN
4. Dany Morisset, Tina Demšar, Kristina Gruden, Jana Vojvoda, Dejan Štebih, Jana Žel: Detection of genetically modified organisms-closing the gaps
5. Bojana Savić, Sanja Tomić, Volker Magnus, Kristina Gruden, Katja Stare, Renata Grenković, Jutta Ludwig-Müller, Branka Salopek-Sondi: Auxin amidohydrolases from Brassica rapa Cleave the alanine conjugate of indolepropionic acid as a preferable substrate
6. Nina Papazova, David Zhang, Kristina Gruden, Jana Vojvoda, Litao Yang, Meti Buh Gašparič, Andrej Blejec, Stephane Fouilloux, Marc De Loose, Isabel Taverniers: Evaluation of the reliability of maize reference assays for GMO quantification
7. Petra Nikolić, Nataša Mehle, Kristina Gruden, Maja Ravnikar, Marina Dermastia: A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group
8. Helena Motaln, Kristina Gruden, Matjaž Hren, Christian Schichor, Monika Primon, Ana Rotter, Tamara Lah Turnšek: Human mesenchymal stem cells exploit the immune response mediating chemokines to impact the phenotype of glioblastoma
9. Nina Prezelj, Petra Nikolić, Kristina Gruden, Maja Ravnikar, Marina Dermastia: Spatiotemporal distribution of flavescence dorée phytoplasma in grapevine
10. Isabel Taverniers, Kristina Gruden, Jana Vojvoda: Harmonised reference genes and PCR assays for GMO quantification
11. Kristina Gruden, Meti Buh Gašparič, Katarina Cankar, Dany Morisset, Jana Žel: Reliability and cost of GMO detection
12. Arne Holst-Jensen, Marko Bohanec, Kristina Gruden, Dany Morisset, Jana Žel, Martin Žnidaršič: Towards detection of unknown GMOs
13. Marko Bohanec, Kristina Gruden, Martin Žnidaršič: The Co-Extra decision support system
14. Blaž Škrlj, Maruša Pompe Novak, Günter Brader, Barbara Anžič, Živa Ramšak, Kristina Gruden, Jan Kralj, Aleš Kladnik, Nada Lavrač, Thomas Roitsch, Marina Dermastia: New cross-talks between pathways involved in grapevine infection with ʼCandidatus Phytoplasma solaniʼ revealed by temporal network modelling
15. Gregor Kosec, Hrvoje Petković, Špela Baebler, Kristina Gruden, Marko Blažič: Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis
16. Mitja Mahnič, Špela Baebler, Andrej Blejec, Špela Jalen, Kristina Gruden, Viktor Menart, Simona Jevševar: Gene expression profiling of recombinant protein producing E. coli at suboptimal growth temperature
17. Meti Buh Gašparič, Katarina Cankar, Jana Žel, Kristina Gruden: Comparision of different real-time PCR chemistries and their suitability for detection and quantification of genetically modified organisms
18. Dany Morisset, Dejan Štebih, Katarina Cankar, Jana Žel, Kristina Gruden: Alternative DNA amplification methods to PCR and their application in GMO detection: a review
19. Jana Žel, Marco Mazzara, Cristian Savini, Stephane Cordeil, Marjana Camloh, Dejan Štebih, Katarina Cankar, Kristina Gruden, Dany Morisset, G. van den Eede: Method validation and quality management in the flexible scope of accreditation
20. Dany Morisset, David Dobnik, Sandrine Hamels, Jana Žel, Kristina Gruden: NAIMA: target amplification strategy allowing quantitative on-chip detection of GMOs
21. Matjaž Hren, Maja Ravnikar, Jernej Brzin, Paolo Ermacora, Luigi Carraro, P.A. Bianco, P. Casati, M. Borgo, E. Angelini, Ana Rotter, Kristina Gruden: Induced expression of sucrose synthase and alcohol dehydrogenase I genes in phytoplasma-infected grapevine plants grown in the field
22. Špela Baebler, Hana Krečič Stres, Ana Rotter, Polona Kogovšek, Katarina Cankar, Esther Kok, Kristina Gruden, Maja Kovač, Jana Žel, Maruša Pompe Novak, Maja Ravnikar: PVY[supra]NTN elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation
23. Hugh Barker, Kara D. McGeachy, Nataša Toplak, Kristina Gruden, Jana Žel, Isla Browning: Comparison of genome sequence of PVY isolates with biological properties
24. Ion Gutiérrez-Aguirre, Nataša Mehle, Duška Delić, Kristina Gruden, Rick Mumford, Maja Ravnikar: Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus
25. Ana Rotter, Matjaž Hren, Kristina Gruden: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata
26. Matjaž Hren, Petra Nikolić, Ana Rotter, Andrej Blejec, Nancy Terrier, Maja Ravnikar, Marina Dermastia, Kristina Gruden: 'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine
27. David Dobnik, Dany Morisset, Kristina Gruden: NAIMA as a solution for future GMO diagnostics challenges
28. Meti Buh Gašparič, Torstein Tengs, Jose Luiz La Paz, Arne Holst-Jensen, Maria Pla, Teresa Esteve, Jana Žel, Kristina Gruden: Comparison of nine different real-time PCR chemistries for qualitative and quantitative applications in GMO detection
29. Ana Rotter, Petra Kralj Novak, Špela Baebler, Nataša Toplak, Andrej Blejec, Nada Lavrač, Kristina Gruden: Gene expression data analysis using closed itemset mining for labeled data
30. Marko Petek, Špela Baebler, Drago Kuzman, Ana Rotter, Zdravko Podlesek, Kristina Gruden, Maja Ravnikar, Uroš Urleb: Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome
31. Polona Kogovšek, Maruša Pompe Novak, Špela Baebler, Ana Rotter, Lisa Gow, Kristina Gruden, Gary D. Foster, Neil Boonham, Maja Ravnikar: Aggressive and mild Potato virus Y isolates trigger different specific responses in susceptible potato plants
32. Urška Čepin, Ion Gutiérrez-Aguirre, Leonida Balažic, Maruša Pompe Novak, Kristina Gruden, Maja Ravnikar: A one-step reverse transcription real-time PCR assay for the detection and quantitation of Grapevine fanleaf virus
33. Špela Baebler, Katja Stare, Maja Kovač, Andrej Blejec, Nina Prezelj, Tjaša Stare, Polona Kogovšek, Maruša Pompe Novak, S. Rosahl, Maja Ravnikar, Kristina Gruden: Dynamics of responses in compatible potato - potato virus Y interaction are modulated by salicylic acid
34. Gabriella Ujhelyi, Jeroen P. van Dijk, Theo W. Prins, Marleen Voorhuijzen, Angeline Van Hoef, Henriek G. Beenen, Dany Morisset, Kristina Gruden, Esther Kok: Comparison and transfer testing of multiplex ligation detection methods for GM plants
35. Jeroen P. van Dijk, Katarina Cankar, Kristina Gruden: The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers
36. Marc Bulcke, Katarina Cankar, Kristina Gruden: The modular approach in GMO quality control and enforcement support systems
37. Maria Pla, Anna Coll Rius, David Dobnik, Kristina Gruden, Dany Morisset: New multiplexing tools for reliable GMO detection
38. Dany Morisset, Dejan Štebih, Mojca Milavec, Kristina Gruden, Jana Žel: Quantitative analysis of food and feed samples with droplet digital PCR