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Revisiting the role of transcription factors in coordinating the defense response against Citrus bark cracking viroid infection in commercial hop (Humulus lupulus L.)
ID
Nath, Vishnu Sukumari
(
Avtor
),
ID
Kumar Mishra, Ajay
(
Avtor
),
ID
Kumar, Atul
(
Avtor
),
ID
Matoušek, Jaroslav
(
Avtor
),
ID
Jakše, Jernej
(
Avtor
)
PDF - Predstavitvena datoteka,
prenos
(4,22 MB)
MD5: 999E2647548A749809BF8CEA84AA2345
URL - Izvorni URL, za dostop obiščite
https://www.mdpi.com/1999-4915/11/5/419
Galerija slik
Izvleček
Transcription factors (TFs) play a major role in controlling gene expression by intricately regulating diverse biological processes such as growth and development, the response to external stimuli and the activation of defense responses. The systematic identification and classification of TF genes are essential to gain insight into their evolutionary history, biological roles, and regulatory networks. In this study, we performed a global mining and characterization of hop TFs and their involvement in Citrus bark cracking viroid CBCVd infection by employing a digital gene expression analysis. Our systematic analysis resulted in the identification of a total of 3,818 putative hop TFs that were classified into 99 families based on their conserved domains. A phylogenetic analysis classified the hop TFs into several subgroups based on a phylogenetic comparison with reference TF proteins from Arabidopsis thaliana providing glimpses of their evolutionary history. Members of the same subfamily and subgroup shared conserved motif compositions. The putative functions of the CBCVd-responsive hop TFs were predicted using their orthologous counterparts in A. thaliana. The analysis of the expression profiling of the CBCVd-responsive hop TFs revealed a massive differential modulation, and the expression of the selected TFs was validated using qRT-PCR. Together, the comprehensive integrated analysis in this study provides better insights into the TF regulatory networks associated with CBCVd infections in the hop, and also offers candidate TF genes for improving the resistance in hop against viroids.
Jezik:
Angleški jezik
Ključne besede:
transcriptional reprogramming
,
viroid pathogenesis
,
hop stunt disease
,
management
Vrsta gradiva:
Članek v reviji
Tipologija:
1.01 - Izvirni znanstveni članek
Organizacija:
BF - Biotehniška fakulteta
Status publikacije:
Objavljeno
Različica publikacije:
Objavljena publikacija
Leto izida:
2019
Št. strani:
19 str.
Številčenje:
Vol. 11, iss. 5, art. 419
PID:
20.500.12556/RUL-132325
UDK:
577.2
ISSN pri članku:
1999-4915
DOI:
10.3390/v11050419
COBISS.SI-ID:
9229433
Datum objave v RUL:
21.10.2021
Število ogledov:
1073
Število prenosov:
145
Metapodatki:
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Objavi na:
Gradivo je del revije
Naslov:
Viruses
Skrajšan naslov:
Viruses
Založnik:
MDPI
ISSN:
1999-4915
COBISS.SI-ID:
517597977
Licence
Licenca:
CC BY 4.0, Creative Commons Priznanje avtorstva 4.0 Mednarodna
Povezava:
http://creativecommons.org/licenses/by/4.0/deed.sl
Opis:
To je standardna licenca Creative Commons, ki daje uporabnikom največ možnosti za nadaljnjo uporabo dela, pri čemer morajo navesti avtorja.
Začetek licenciranja:
05.05.2019
Sekundarni jezik
Jezik:
Slovenski jezik
Ključne besede:
genetske transformacije
,
viroid razpokanosti skorje agrumov
,
CBCVd
,
huda viroidna zakrnelost hmelja
,
Humulus lupulus
,
hmelj
,
transkriptomska analiza
,
različno izraženi geni
Projekti
Financer:
Drugi - Drug financer ali več financerjev
Program financ.:
Operational Programme Research, Development and Education
Številka projekta:
CZ.02.2.69/0.0/0.0/16_027/0008357
Akronim:
MEMOBIC
Financer:
Drugi - Drug financer ali več financerjev
Program financ.:
Czech Science foundation
Številka projekta:
18-10515J/DFG STE 465/10-1
Financer:
ARRS - Agencija za raziskovalno dejavnost Republike Slovenije
Številka projekta:
P4-0077
Naslov:
Kmetijske rastline - genetika in sodobne tehnologije
Financer:
Drugi - Drug financer ali več financerjev
Številka projekta:
RVO:60077344
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