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Načrtovanje in razvoj rekombinantnega nitastega bakteriofaga kot funkcionalne alternative protitelesom v encimskoimunskem testu
ID Mertelj, Janja (Avtor), ID Bratkovič, Tomaž (Mentor) Več o mentorju... Povezava se odpre v novem oknu, ID Gnidovec, Klemen (Komentor)

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Izvleček
Imunokemijski testi predstavljajo pomembno analitsko orodje v diagnostiki in raziskavah. Ker je priprava protiteles pogosto dolgotrajna in draga, obstaja potreba po razvoju alternativnih detekcijskih sistemov. V okviru magistrske naloge smo zato razvili modularno detekcijsko sondo na osnovi rekombinantnega nitastega bakteriofaga kot alternativo protitelesom v encimskoimunskem testu. Na površini nitastega bakteriofaga smo s pomočjo hibridnega bakteriofagnega vektorja f88KE, ki omogoča dvojno predstavitev, predstavili peptida SpyTag in SnoopTag. Kot reportersko komponento sistema smo pripravili fuzijski protein SpyCatcher-betalaktamaza, sestavljen iz proteinskega partnerja SpyCatcher in reporterskega encima betalaktamaze. Vezavno komponento sistema pa so predstavljali različni fuzijski proteini (vezavni protein-SnoopCatcher-ji), sestavljeni iz različnih mimetikov protiteles in proteinskega partnerja SnoopCatcher. Fuzijske proteine smo izrazili v bakterijah Escherichia coli, jih izolirali in očistili s kromatografskimi metodami. Uspešnost priprave fuzijskih proteinov in njihovo konjugacijo na rekombinantne nitaste bakteriofage smo ovrednotili s poliakrilamidno gelsko elektroforezo v prisotnosti natrijevega dodecil sulfata in prenosom western. Delovanje razvitega sistema smo preizkusili pri detekciji modelnega antigena in vnetnih citokinov v formatu modificiranega fagnega encimskoimunskega testa in v sendvič obliki encimskoimunskega testa. Vse načrtovane fuzijske proteine smo uspešno izrazili, izolirali in očistili ter jih s pomočjo dveh ortogonalnih sistemov Catcher/Tag uspešno konjugirali na površino rekombinantnih nitastih bakteriofagov. Dvojno konjugirani bakteriofagi so se specifično vezali na tarče in omogočili nastanek merljivega signala. Pri primerjavi z uveljavljenimi imunokemijskimi pristopi pa se je izkazalo, da je občutljivost razvitega sistema približno tri velikostne rede nižja od občutljivosti klasičnega encimskoimunskega testa. Razvita detekcijska sonda vseeno predstavlja obetavno modularno platformo za zaznavanje različnih bioloških molekul. Rezultati potrjujejo možnost uporabe rekombinantnih nitastih bakteriofagov kot funkcionalnih alternativ protitelesom, nadaljnja optimizacija reporterskega sistema in pogojev detekcije pa bi lahko izboljšala občutljivost ter razširila uporabnost razvite platforme v analitskih, raziskovalnih in diagnostičnih aplikacijah.

Jezik:Slovenski jezik
Ključne besede:rekombinantni nitasti bakteriofag, encimskoimunski test, mimetiki protiteles, betalaktamaza, detekcija antigenov
Vrsta gradiva:Magistrsko delo/naloga
Tipologija:2.09 - Magistrsko delo
Organizacija:FFA - Fakulteta za farmacijo
Založnik:[J. Mertelj]
Leto izida:2026
PID:20.500.12556/RUL-187815 Povezava se odpre v novem oknu
UDK:57.083.3(043.2)
COBISS.SI-ID:291427587 Povezava se odpre v novem oknu
Datum objave v RUL:15.09.2026
Število ogledov:90
Število prenosov:18
Metapodatki:XML DC-XML DC-RDF
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Sekundarni jezik

Jezik:Angleški jezik
Naslov:Design and development of recombinant filamentous bacteriophage as a functional antibody alternative in enzyme-linked immunoassay
Izvleček:
Immunoassays represent an important analytical tool in diagnostics and research. Since the production of antibodies is often time-consuming and costly, there is a need for the development of alternative detection systems. The aim of this master's thesis was to develop a modular detection probe based on a recombinant filamentous bacteriophage as an alternative to antibodies in enzyme-linked immunosorbent assays. The hybrid bacteriophage vector f88KE, which enables dual display, was used to simultaneously display the peptides SpyTag and SnoopTag on the surface of the filamentous bacteriophage. The reporter component of the system consisted of the fusion protein SpyCatcher-betalactamase, composed of the protein partner SpyCatcher and the reporter enzyme betalactamase. The binding component was represented by various binding protein-SnoopCatcher fusion proteins composed of different antibody mimetics and the protein partner SnoopCatcher. The fusion proteins were expressed in Escherichia coli, isolated, and purified using chromatographic methods. The successful production of the fusion proteins and their conjugation to recombinant filamentous bacteriophages were evaluated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and western blotting. The functionality of the developed system was assessed by detecting a model antigen and inflammatory cytokines using a modified phage enzyme-linked immunosorbent assay and a sandwich enzyme-linked immunosorbent assay format. All designed fusion proteins were successfully expressed, isolated, and purified and were subsequently conjugated to the surface of recombinant filamentous bacteriophages using two orthogonal Catcher/Tag systems. The doubly conjugated bacteriophages specifically bound their targets and generated a measurable signal. However, comparison with established immunochemical assays revealed that the sensitivity of the developed system was approximately three orders of magnitude lower than that of a conventional enzyme-linked immunosorbent assay. Nevertheless, the developed detection probe represents a promising modular platform for the detection of various biological molecules. The results demonstrate the potential of recombinant filamentous bacteriophages as functional alternatives to antibodies, while further optimization of the reporter system and detection conditions could improve sensitivity and expand the applicability of the developed platform in analytical, research, and diagnostic applications.

Ključne besede:recombinant filamentous bacteriophage, enzyme-linked immunosorbent assay, antibody mimetics, betalactamase, antigen detection

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