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Optimizacija izolacije protoplastov vinske trte in genska transformacija z metodo CRISPR/Cas9
ID Perko, Nika (Avtor), ID Pompe Novak, Maruša (Mentor) Več o mentorju... Povezava se odpre v novem oknu

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Izvleček
Rastlinski protoplasti se pogosto uporabljajo za transfekcijo in so bili uporabljeni pri različnih rastlinskih vrstah za funkcionalno karakterizacijo genov ter preučevanje signalnih poti. Opisani sistemi za uporabo protoplastov pri vinski trti (Vitis vinifera L.) so še vedno redki, kar je predvsem posledica zahtevnosti izolacije živih protoplastov, njihove transfekcije ter nadaljnjega gojenja v in vitro pogojih. Namen magistrske naloge je bil optimizirati izolacijo, gojenje in transfekcijo protoplastov iz tkivne kulture vinske trte sorte Zweigelt ter s tem prispevati k razvoju metod za povečanje odpornosti vinske trte na fitoplazme. Pri encimski izolaciji protoplastov smo opazovali vpliv homogenizacije listov, starosti listov, starosti tkivne kulture, sestave encimske raztopine in časa encimske razgradnje. Opažen je bil trend boljše izolacije iz prvih odprtih listov, razrezanih na 3 mm široke trakove, iz mlajših tkivnih kultur, s peturno encimsko razgradnjo z raztopino Z, katere sestava je povzeta po Zhao in sod. Za namen optimizacije pogojev za gojenje protoplastov smo pri nekaterih vzorcih vključili tudi stresanje. Ugotovili smo, da stresanje zmanjša preživetje, medtem ko so v mirovanju ostali živi do tri dni. Transfekcijo protoplastov smo izvedli ob prisotnosti PEG in plazmida. Uspešnost transfekcije smo potrdili s plazmidom, ki je nosil zapis za protein eGFP, čigar fluorescenco smo zaznali pod konfokalnim mikroskopom. Z reakcijo LR, ki omogoča mestno-specifično rekombinacijo med mestoma attL in attR, smo sestavili plazmid, ki je vseboval zapise za protein Cas9, usmerjevalno RNA in del gena vvCWINV1B. Namen zasnove je bila tarčna inaktivacija gena vvCWINV1B, katerega izražanje se, glede na rezultate predhodnih študij, poveča ob okužbi rastline s fitoplazmo. Uporaba tako transformirane rastline bi omogočila funkcijsko analizo vloge gena ob okužbi. Za transfekcijo smo uporabili protoplaste iz embriogenega kalusa vinske trte sorte Zweigelt. Reakcijo smo izvedli iz 1,5 × 10$^5$ protoplastov in 10 μg plazmida ter jo prekinili po 5 minutah. Uspešnost transfekcije smo želeli preveriti s Sangerjevim sekvenciranjem, vendar smo pri tem naleteli na težave s pomnoževanjem dela genomske DNA. Rezultati naših poskusov so razkrili trende, ki predstavljajo izhodišča za nadaljnje optimizacijske raziskave. Na podlagi teh ugotovitev bi bilo smiselno v prihodnje usmeriti več eksperimentalnega dela v izboljšanje postopkov za izolacijo in gojenje protoplastov iz listnega tkiva vinske trte sorte Zweigelt.

Jezik:Slovenski jezik
Ključne besede:protoplasti, transfekcija, gojenje, vinska trta
Vrsta gradiva:Magistrsko delo/naloga
Tipologija:2.09 - Magistrsko delo
Organizacija:FKKT - Fakulteta za kemijo in kemijsko tehnologijo
Leto izida:2025
PID:20.500.12556/RUL-174283 Povezava se odpre v novem oknu
COBISS.SI-ID:258917635 Povezava se odpre v novem oknu
Datum objave v RUL:30.09.2025
Število ogledov:180
Število prenosov:45
Metapodatki:XML DC-XML DC-RDF
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Sekundarni jezik

Jezik:Angleški jezik
Naslov:Optimisation of grapevine protoplast isolation and genetic transformation by the CRSIPRS/Cas9 method
Izvleček:
Plant protoplasts are frequently used for transfection and have been applied in various plant species for the functional characterization of genes and the study of signaling pathways. Described systems for the use of protoplasts in grapevine (Vitis vinifera L.) are still rare, mainly due to the complexity of obtaining a sufficient quantity of viable protoplasts, transient transfection, and subsequent cultivation under in vitro conditions. The aim of the master's thesis was to optimize the isolation, cultivation, and transfection of protoplasts from the tissue culture of Vitis vinifera L. cv. Zweigelt, thereby contributing to the development of methods to enhance grapevine resistance to phytoplasmas. During enzymatic isolation of protoplasts, we examined the effects of leaf homogenization, leaf age, tissue culture age, enzyme solution composition and enzymatic digestion time. A trend was observed indicating better isolation from the first fully opened leaves, cut into 3 mm wide strips, from younger tissue cultures, with a five-hour enzymatic digestion using solution Z, the composition of which was adapted from Zhao et al. For the purpose of optimizing protoplast culture conditions, we also included shaking in some of the samples. We found out that shaking reduced viability, while protoplasts remained viable for up to three days when kept stationary. Protoplast transfection was performed in the presence of PEG and plasmid. The success of the transfection was confirmed using a plasmid carrying the eGFP gene, whose fluorescence was detected under a confocal microscope. With the LR reaction, which enables site-specific recombination between the attL and attR sites, we constructed a plasmid containing the sequences for the Cas9 protein, the guide RNA, and a fragment of the vvCWINV1B gene. The aim of this design was targeted inactivation of the vvCWINV1B gene, which, based on previous studies, shows increased expression upon phytoplasma infection. The use of such a transformed plant would allow for functional analysis of the gene's role during pathogenic interaction. Protoplasts from embryogenic callus of Zweigelt grapevine were used for transfection. The reaction was performed with 1.5 × 10$^5$ protoplasts and 10 μg of plasmid and was stopped after 5 minutes. We aimed to verify the success of the transfection using Sanger sequencing, but encountered difficulties in amplifying a portion of the genomic DNA. The results of our experiments revealed trends that serve as a foundation for further optimization studies. Based on these findings, it would be advisable to focus future experimental efforts on improving the protocols for isolation and cultivation of protoplasts from leaf tissue of the grapevine cultivar Zweigelt.

Ključne besede:protoplast, transient transfection, cultivation, grapevine

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