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Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions
ID
VarGoats Consortium
(
Avtor
),
ID
Nijman, Isaäc J.
(
Avtor
),
ID
Horvat, Simon
(
Avtor
),
ID
Simčič, Mojca
(
Avtor
)
PDF - Predstavitvena datoteka,
prenos
(4,10 MB)
MD5: 28BA6A3EA2AEE59D8F9F83DC8A5DF7CB
URL - Izvorni URL, za dostop obiščite
https://onlinelibrary.wiley.com/doi/10.1111/mec.16579
Galerija slik
Izvleček
By their paternal transmission, Y-chromosomal haplotypes are sensitive markers of population history and male-mediated introgression. Previous studies identified biallelic single-nucleotide variants in the SRY, ZFY and DDX3Y genes, which in domestic goats identified four major Y-chromosomal haplotypes, Y1A, Y1B, Y2A and Y2B, with a marked geographical partitioning. Here, we extracted goat Y-chromosomal variants from whole-genome sequences of 386 domestic goats (75 breeds) and seven wild goat species, which were generated by the VarGoats goat genome project. Phylogenetic analyses indicated domestic haplogroups corresponding to Y1B, Y2A and Y2B, respectively, whereas Y1A is split into Y1AA and Y1AB. All five haplogroups were detected in 26 ancient DNA samples from southeast Europe or Asia. Haplotypes from present-day bezoars are not shared with domestic goats and are attached to deep nodes of the trees and networks. Haplogroup distributions for 186 domestic breeds indicate ancient paternal population bottlenecks and expansions during migrations into northern Europe, eastern and southern Asia, and Africa south of the Sahara. In addition, sharing of haplogroups indicates male-mediated introgressions, most notably an early gene flow from Asian goats into Madagascar and the crossbreeding that in the 19th century resulted in the popular Boer and Anglo-Nubian breeds. More recent introgressions are those from European goats into the native Korean goat population and from Boer goat into Uganda, Kenya, Tanzania, Malawi and Zimbabwe. This study illustrates the power of the Y-chromosomal variants for reconstructing the history of domestic species with a wide geographical range.
Jezik:
Angleški jezik
Ključne besede:
domestication
,
goat
,
haplogroup
,
introgression
,
migration
,
phylogeography
,
Y-chromosome
Vrsta gradiva:
Članek v reviji
Tipologija:
1.01 - Izvirni znanstveni članek
Organizacija:
BF - Biotehniška fakulteta
Status publikacije:
Objavljeno
Različica publikacije:
Objavljena publikacija
Leto izida:
2022
Št. strani:
Str. 4364-4380
Številčenje:
Vol. 31, iss. 16
PID:
20.500.12556/RUL-142150
UDK:
575:636.39
ISSN pri članku:
1365-294X
DOI:
10.1111/mec.16579
COBISS.SI-ID:
113141763
Datum objave v RUL:
21.10.2022
Število ogledov:
450
Število prenosov:
81
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Objavi na:
Gradivo je del revije
Naslov:
Molecular ecology
Skrajšan naslov:
Mol. ecol.
Založnik:
Wiley
ISSN:
1365-294X
COBISS.SI-ID:
22959833
Licence
Licenca:
CC BY-NC-ND 4.0, Creative Commons Priznanje avtorstva-Nekomercialno-Brez predelav 4.0 Mednarodna
Povezava:
http://creativecommons.org/licenses/by-nc-nd/4.0/deed.sl
Opis:
Najbolj omejujoča licenca Creative Commons. Uporabniki lahko prenesejo in delijo delo v nekomercialne namene in ga ne smejo uporabiti za nobene druge namene.
Sekundarni jezik
Jezik:
Slovenski jezik
Ključne besede:
genetika
,
introgresija
,
divje koze
,
kozorogi
,
domače koze
Projekti
Financer:
Drugi - Drug financer ali več financerjev
Program financ.:
Croatian Science Foundation
Številka projekta:
ANAGRAMS-IP-2018-01-8708
Naslov:
Application of NGS in assessment of genomic variability in ruminants
Financer:
Drugi - Drug financer ali več financerjev
Program financ.:
EU
Številka projekta:
ECONOGENE QLK5–CT2001–02461
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