11. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmissionBojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, izvirni znanstveni članek Ključne besede: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation Celotno besedilo (datoteka, 855,26 KB) Gradivo ima več datotek! Več... |
12. HIV-1 unique recombinant forms identified in Slovenia and their characterization by near full-length genome sequencingMaja M. Lunar, Jana Mlakar, Tomaž Mark Zorec, Mario Poljak, 2020, izvirni znanstveni članek Ključne besede: molecular epidemiology, HIV-1, subtype, unique recombinant form, near full-length genome, next-generation sequencing, surveillance Celotno besedilo (datoteka, 2,65 MB) Gradivo ima več datotek! Več... |
13. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operationBojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, izvirni znanstveni članek Ključne besede: Paenibacillus larvae, American foulbrood, AFB, whole-genome sequencing, WGS, whole-genome multilocus sequence typing, wgMLST, outbreak, beekeeping operation, molecular sequence data, genotype Celotno besedilo (datoteka, 1,11 MB) Gradivo ima več datotek! Več... |
14. Phylogeography of Brucella suis biovar 2 with focus on Slovenian wildlifeBojan Papić, Darja Kušar, Branko Krt, Matjaž Ocepek, Jana Avberšek, 2023, izvirni znanstveni članek Ključne besede: Brucella suis, biovar 2, wildlife, whole-genome sequencing Celotno besedilo (datoteka, 1,33 MB) Gradivo ima več datotek! Več... |
15. Complete genome sequencing of tick-borne encephalitis virus directly from clinical samplesSamo Zakotnik, Nataša Knap, Petra Bogovič, Tomaž Mark Zorec, Mario Poljak, Franc Strle, Tatjana Avšič-Županc, Miša Korva, 2022, izvirni znanstveni članek Ključne besede: tick-borne encephalitis virus, whole genome sequencing, metagenomics, amplicons, next-generation sequencing, NGS, clinical samples Celotno besedilo (datoteka, 1,19 MB) Gradivo ima več datotek! Več... |
16. Genomic insights into methicillin-resistant staphylococci and mammaliicocci from bulk tank milk of dairy farms in SerbiaAndrea Kos, Bojan Papić, Majda Golob, Jana Avberšek, Darja Kušar, Tijana Ledina, Jasna Đorđević, Snežana Bulajić, 2023, izvirni znanstveni članek Ključne besede: Staphylococcus aureus, milk, virulence factors, whole genome sequencing Celotno besedilo (datoteka, 1,17 MB) Gradivo ima več datotek! Več... |
17. Genomic insights into the safety and bacteriocinogenic potential of isolates from artisanal fermented milk MatsoniVita Rozman, Petra Mohar Lorbeg, Nina Chanishvili, Tomaž Accetto, Elene Kakabadze, Nino Grdzelishvili, Maja Rupnik, Bojana Bogovič Matijašić, 2023, izvirni znanstveni članek Ključne besede: whole genome sequencing, fermented milk, prophages, bacteriocins, tetM, mefE Celotno besedilo (datoteka, 3,84 MB) Gradivo ima več datotek! Več... |
18. Antimicrobial susceptibility and characterization of extended-spectrum β-lactamase-producig Escherichia coli isolated from stools of primary healthcare patients in EthiopiaWolde Deneke, Tadesse Eguale, Haile Alemayehu, Aklilu Feleke Haile, Girmay Medhin, Mateja Pirš, Katja Strašek, Jana Avberšek, Darja Kušar, Tjaša Cerar Kišek, Tea Janko, Andrej Steyer, Marjanca Starčič Erjavec, 2023, izvirni znanstveni članek Ključne besede: Escherichia coli, antimicrobial susceptibility, ESBL, Ethiopia, whole-genome sequencing Celotno besedilo (datoteka, 310,44 KB) Gradivo ima več datotek! Več... |
19. Integration and analysis of scRNAseq data using genome-scale metabolic modelsJurij Nastran, 2024, magistrsko delo/naloga Ključne besede: genome-scale metabolic models, model extraction methods, context-specific metabolic models, omics data integration, metabolism, cancer, single-cell RNA sequencing data Celotno besedilo (datoteka, 9,00 MB) |