11. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmissionBojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, original scientific article Keywords: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation Full text (file, 855,26 KB) This document has more files! More... |
12. HIV-1 unique recombinant forms identified in Slovenia and their characterization by near full-length genome sequencingMaja M. Lunar, Jana Mlakar, Tomaž Mark Zorec, Mario Poljak, 2020, original scientific article Keywords: molecular epidemiology, HIV-1, subtype, unique recombinant form, near full-length genome, next-generation sequencing, surveillance Full text (file, 2,65 MB) This document has more files! More... |
13. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operationBojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood, AFB, whole-genome sequencing, WGS, whole-genome multilocus sequence typing, wgMLST, outbreak, beekeeping operation, molecular sequence data, genotype Full text (file, 1,11 MB) This document has more files! More... |
14. Phylogeography of Brucella suis biovar 2 with focus on Slovenian wildlifeBojan Papić, Darja Kušar, Branko Krt, Matjaž Ocepek, Jana Avberšek, 2023, original scientific article Keywords: Brucella suis, biovar 2, wildlife, whole-genome sequencing Full text (file, 1,33 MB) This document has more files! More... |
15. Complete genome sequencing of tick-borne encephalitis virus directly from clinical samplesSamo Zakotnik, Nataša Knap, Petra Bogovič, Tomaž Mark Zorec, Mario Poljak, Franc Strle, Tatjana Avšič-Županc, Miša Korva, 2022, original scientific article Keywords: tick-borne encephalitis virus, whole genome sequencing, metagenomics, amplicons, next-generation sequencing, NGS, clinical samples Full text (file, 1,19 MB) This document has more files! More... |
16. Genomic insights into methicillin-resistant staphylococci and mammaliicocci from bulk tank milk of dairy farms in SerbiaAndrea Kos, Bojan Papić, Majda Golob, Jana Avberšek, Darja Kušar, Tijana Ledina, Jasna Đorđević, Snežana Bulajić, 2023, original scientific article Keywords: Staphylococcus aureus, milk, virulence factors, whole genome sequencing Full text (file, 1,17 MB) This document has more files! More... |
17. Genomic insights into the safety and bacteriocinogenic potential of isolates from artisanal fermented milk MatsoniVita Rozman, Petra Mohar Lorbeg, Nina Chanishvili, Tomaž Accetto, Elene Kakabadze, Nino Grdzelishvili, Maja Rupnik, Bojana Bogovič Matijašić, 2023, original scientific article Keywords: whole genome sequencing, fermented milk, prophages, bacteriocins, tetM, mefE Full text (file, 3,84 MB) This document has more files! More... |
18. Antimicrobial susceptibility and characterization of extended-spectrum β-lactamase-producig Escherichia coli isolated from stools of primary healthcare patients in EthiopiaWolde Deneke, Tadesse Eguale, Haile Alemayehu, Aklilu Feleke Haile, Girmay Medhin, Mateja Pirš, Katja Strašek, Jana Avberšek, Darja Kušar, Tjaša Cerar Kišek, Tea Janko, Andrej Steyer, Marjanca Starčič Erjavec, 2023, original scientific article Keywords: Escherichia coli, antimicrobial susceptibility, ESBL, Ethiopia, whole-genome sequencing Full text (file, 310,44 KB) This document has more files! More... |
19. Integration and analysis of scRNAseq data using genome-scale metabolic modelsJurij Nastran, 2024, master's thesis/paper Keywords: genome-scale metabolic models, model extraction methods, context-specific metabolic models, omics data integration, metabolism, cancer, single-cell RNA sequencing data Full text (file, 9,00 MB) |