1. A de novo variant in OTX2 in a lamb with otocephalyJulia Maria Paris, Anna Letko, Irene Monika Häflinger, Tanja Švara, Mitja Gombač, Primož Klinc, Andrej Škibin, Estera Pogorevc, Cord Drögemüller, 2020, drugi znanstveni članki Ključne besede: Agnathia, microstomia, precision medicine, rare disease, synotia, whole-genome sequencing, sheep
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2. ERIC and WGS typing of Paenibacillus larvae in SloveniaAlenka Žugelj, Bojan Papić, Irena Zdovc, Urška Zajc, Majda Golob, Jana Avberšek, Darja Kušar, 2021, izvirni znanstveni članek Ključne besede: Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
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3. Genomic insights into the emergence and spread of methicillin-resistant Staphylococcus pseudintermedius in veterinary clinicsBojan Papić, Majda Golob, Irena Zdovc, Darja Kušar, Jana Avberšek, 2021, izvirni znanstveni članek Ključne besede: antimicrobial susceptibility testing, epidemiology, methicillin-resistant Staphylococcus pseudintermedius (MRSP), small animal clinic, whole-genome sequencing (WGS)
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4. Beer spoiling mechanisms of Lactobacillus brevisMateja Govže, 2017, magistrsko delo Ključne besede: beer, hop, Humulus lupulus, beer spoilage, lactic acid bacteria, Lactobacillus brevis, genome, genome sequencing, genome analysis, RNA sequencing, transcriptomic analysis, gene expression analysis, fenotypic analysis
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5. Staphylococcus pseudintermedius septicemia in puppies after elective cesarean sectionMaja Zakošek, Tanja Švara, Irena Zdovc, Bojan Papić, Jana Avberšek, Darja Kušar, Janko Mrkun, 2019, izvirni znanstveni članek Ključne besede: staphylococcal infections, whole genome sequencing, milk, dogs
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6. Source tracking on a dairy farm reveals a high occurrence of subclinical mastitis due to hypervirulent Listeria monocytogenes clonal complexesBojan Papić, Majda Golob, Darja Kušar, Mateja Pate, Irena Zdovc, 2019, izvirni znanstveni članek Ključne besede: Listeria monocytogenes, food safety, whole‐genome sequencing, pulsed‐field gel electrophoresis, virulence, cattle
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7. Comparison of selected methods in bacteriological diagnostics and their use in bacterial typingKatarina Benulič, 2020, doktorsko delo/naloga Ključne besede: 16S rDNA PCR, real-time PCR, bacteria, syndromic testing, cultivation, ventilator-associated pneumonia, meningitis, arthritis, Klebsiella pneumoniae, whole-genome sequencing, WGS, NGS, resistance, carbapenemase, OXA-48, NDM, outbreak
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8. Identification of novel reassortant mammalian orthoreoviruses from bats in SloveniaTina Mikuletič, Danijela Černe, Peter Hostnik, Nataša Toplak, Simon Koren, Urška Kuhar, Urška Jamnikar Ciglenečki, Denis Kutnjak, Andrej Steyer, 2018, izvirni znanstveni članek Ključne besede: bats, genome reassortment, mammalian orthoreovirus, whole genome sequencing
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9. Analysis of the global population structure of Paenibacillus larvae and outbreak investigation of American foulbrood using a stable wgMLST schemeBojan Papić, Margo Diricks, Darja Kušar, 2021, izvirni znanstveni članek Ključne besede: Paenibacillus larvae, American foulbrood, whole-genome sequencing, whole-genome multilocus sequence typing, core-genome multilocus sequence typing, whole-genome single nucleotide polymorphism, genotype, molecular sequence
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10. Feline otitis externa caused by methicillin-resistant Staphylococcus aureus with mixed hemolytic phenotype and overview of possible genetic backgroundsJana Avberšek, Bojan Papić, Darja Kušar, Vladimira Erjavec, Katja Seme, Majda Golob, Irena Zdovc, 2021, izvirni znanstveni članek Ključne besede: methicillin-resistant Staphylococcus aureus (MRSA), otitis externa, cat, whole-genome sequencing (WGS), mixed hemolysis, genetics, microbiology
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