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Integrative protocol for quantifying cholesterol-related sterols in human serum samples and building decision support systems
ID Kočar, Eva (Author), ID Pušnik, Žiga (Author), ID Skubic, Cene (Author), ID Režen, Tadeja (Author), ID Mraz, Miha (Author), ID Moškon, Miha (Author), ID Rozman, Damjana (Author), et al.

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Abstract
The growing interest in clinical diagnostics has recently focused on metabolic biomarkers. Here, we present a protocol for sample preparation, extraction of cholesterol-related sterols, and quantification of 10 sterols in human blood serum samples using targeted liquid chromatography-tandem mass spectrometry (LC-MS/MS). We also describe steps of machine learning techniques to develop novel decision-making systems that offer potential benefits in disease monitoring and surveillance by measuring metabolic pathways. For complete details on the use and execution of this protocol, please refer to Kočar et al. (https://doi.org/10.1016/j.isci.2023.107799) and Skubic et al. (https://doi.org/10.3390/molecules25184116).

Language:English
Keywords:computer sciences, metabolism, molecular biology
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:MF - Faculty of Medicine
FRI - Faculty of Computer and Information Science
Publication status:Published
Publication version:Version of Record
Year:2024
Number of pages:23 str.
Numbering:Vol. 5, iss. 3, art. 103213
PID:20.500.12556/RUL-165281 This link opens in a new window
UDC:61:577
ISSN on article:2666-1667
DOI:10.1016/j.xpro.2024.103213 This link opens in a new window
COBISS.SI-ID:206706435 This link opens in a new window
Publication date in RUL:29.11.2024
Views:529
Downloads:165
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Record is a part of a journal

Title:STAR protocols
Publisher:Elsevier
ISSN:2666-1667
COBISS.SI-ID:56300547 This link opens in a new window

Licences

License:CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Link:http://creativecommons.org/licenses/by-nc-nd/4.0/
Description:The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.

Secondary language

Language:Slovenian
Keywords:računalništvo, metabolizem, presnova, molekularna biologija

Projects

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P1-0390
Name:Funkcijska genomika in biotehnologija za zdravje

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P2-0359
Name:Vseprisotno računalništvo

Funder:ARIS - Slovenian Research and Innovation Agency
Funding programme:Young researchers

Funder:EC - European Commission
Funding programme:H2020
Project number:860895
Name:Translational SYStemics: Personalised Medicine at the Interface of Translational Research and Systems Medicine
Acronym:TranSYS

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:I0-0022
Name:Mreža raziskovalnih infrastrukturnih centrov Univerze v Ljubljani (MRIC UL)

Funder:EC - European Commission
Funding programme:European Regional Development Fund
Acronym:ELIXIR-SI

Funder:Republic of Slovenia, Ministry of Education, Science, and Sport
Acronym:ELIXIR-SI

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