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Genotipizacija sevov respiratornega sincicijskega virusa (HRSV) pri otrocih, zdravljenih v intenzivni enoti
ID Luštrek, Manca (Author), ID Petrovec, Miroslav (Mentor) More about this mentor... This link opens in a new window, ID Jevšnik Virant, Monika (Co-mentor)

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Abstract
Človeški respiratorni sincicijski virus (HRSV) je najpomembnejši virus, ki povzroča okužbe dihal pri dojenčkih in majhnih otrocih. Povzroča bronhiolitis in pljučnice. Virus obstaja v dveh antigenskih podskupinah označenih kot HRSV-A in HRSV-B ter številnih genotipih, katerih okužbe povzročajo različen potek bolezni. Ugotoviti smo želeli ali je zdravljenje v intenzivni enoti bolj povezano z okužbo s podskupino HRSV-A in nadalje ali določeni genotipi podskupine HRSV-A povzročajo posebej hudo klinično sliko, ki zahteva zdravljenje na oddelkih intenzivne terapije. V raziskavo smo vključili brise nosnega dela žrela otrok iz Pediatrične klinike Univerzitetnega kliničnega centra v Ljubljani. Izvedli smo vgnezdeni PCR. Pomnoževanje RNA smo izvedli na delu gena za hipervariabilno regijo beljakovine G. Pridelkom smo določili nukleotidno zaporedje z avtomatsko metodo sekvenciranja po Sangerju. Večina s HRSV okuženih otrok, vključenih v našo raziskavo, je spadala v starostno skupino 0-3 meseci. S HRSV je bilo okuženih več dečkov kot deklic. Med leti 2018 in 2021 smo v naši raziskavi dokazali 2 genotipa: HRSV-A/ON1 in HRSV-B/BA. Več otrok je bilo hospitaliziranih zaradi okužbe z genotipom HRSV-B/BA kot z genotipom HRSV-A/ON1. Razlike v pojavnosti genotipov glede na potek bolezni nismo ugotovili. Pred pojavom novega človeškega koronavirusa SARS-CoV-2 so prevladovale okužbe s podskupino HRSV-B, po pojavu SARS-CoV-2 pa okužbe s podskupino HRSV-A. Pojav novega človeškega koronavirusa SARS-CoV-2 je spremenil dinamiko okužb s HRSV. Sočasne okužbe so se pogosteje pojavljale pri otrocih hospitaliziranih v intenzivnem oddelku.

Language:Slovenian
Keywords:virusi, respiratorni sincicijski virus, otroci, bronhiolitis, genotipizacija, vgnezditveni RT-PCR v realnem času, sekvenciranje
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Place of publishing:Ljubljana
Publisher:[M. Luštrek]
Year:2022
PID:20.500.12556/RUL-138071 This link opens in a new window
UDC:578.5:616.9-053.2
COBISS.SI-ID:113108483 This link opens in a new window
Publication date in RUL:09.07.2022
Views:624
Downloads:138
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Secondary language

Language:English
Title:Genotyping of respiratory syncytial virus (HRSV) among children, hospitalized in pediatric intensive care units
Abstract:
Human respiratory syncytial virus (HRSV) is the major cause of respiratory infections in infants and young children. It causes bronchiolitis and pneumonia. There are two major HRSV subtypes, HRSV-A and HRSV-B and multiple genotypes which can result in different disease severity. We wanted to determine whether intensive care treatment is more associated with HRSV-A subgroup infection and further whether certain genotypes of the HRSV-A subgroup cause a particularly severe clinical picture that requires treatment in intensive care units. The study included nasopharyngeal swabs of children hospitalized at the University Children's Hospital in Ljubljana. Nested PCR and sequencing were preformed on hypervariable region of the G gene. Most of the children included in our study were 0-3 months old. HRSV was more often detected in boys. Between 2018 and 2021, two genotypes appeared in hospitalized children in our study: HRSV-A/ON1 and HRSV-B/BA. Genotype HRSV-B/BA was more often detected in hospitalized children than genotype HRSV-A/ON1. Both genotypes cause an equally severe course of the disease. Before the appearance of the new human coronavirus SARS-CoV-2, infections with the subgroup HRSV-B predominated and after the appearance of SARS-CoV-2, infections with the subgroup HRSV-A prevailed. The emergence of the new human coronavirus SARS-CoV-2 has changed the dynamics of HRSV infections. Coinfections with other respiratory viruses were more common in children hospitalized in the intensive care unit.

Keywords:viruses, respiratory syncytial virus, children, bronchiolitis, genotyping, nested PCR, sequencing

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