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ERIC and WGS typing of Paenibacillus larvae in Slovenia : investigation of ERIC I outbreaks
ID Žugelj, Alenka (Author), ID Papić, Bojan (Author), ID Zdovc, Irena (Author), ID Zajc, Urška (Author), ID Golob, Majda (Author), ID Avberšek, Jana (Author), ID Kušar, Darja (Author)

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Abstract
Paenibacillus larvae is the causative agent of American foulbrood (AFB), a fatal disease of honeybee brood. Here, we obtained 506 P. larvae isolates originating from honey or brood samples and from different geographic regions of Slovenia in the period 2017–2019. In the first part of the study, we conducted ERIC-PCR typing to assess the frequency of ERIC types in Slovenia. Capillary electrophoresis was used for the analysis of ERIC patterns, revealing good separation efficiency and enabling easy lane-to-lane comparisons. ERIC II was the predominant type (70.2%), followed by ERIC I (29.8%); two slightly altered ERIC I banding patterns were observed but were not considered relevant for the discrimination of ERIC types. No evident spatiotemporal clustering of ERIC types was observed. To assess the clonality of the outbreak-related P. larvae ERIC I isolates, 59 isolates of this type underwent whole-genome sequencing (WGS). Whole-genome multilocus sequence typing (wgMLST) revealed seven ERIC I-ST2 outbreak clusters (≤35 allele differences) with the median intra-outbreak diversity ranging from 7 to 27 allele differences. In all seven clusters, the transmission of P. larvae outbreak clone within a 3-km radius (AFB zone) was observed, which could be explained by the activity of honeybees. In three clusters, the transmission of the outbreak clone between geographically distant apiaries was revealed, which could be explained by the activities of beekeepers such as migratory beekeeping and trading of bee colonies. The present findings reinforce the importance of beekeeping activities in the transmission of P. larvae. WGS should be used as a reference typing method for the detection of P. larvae transmission clusters.

Language:English
Keywords:Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
Work type:Article (dk_c)
Typology:1.01 - Original Scientific Article
Organization:VF - Veterinary Faculty
Year:2021
Publication status in journal:Published
Article version:Publisher's version of article
Number of pages:11 str.
Numbering:Vol. 12, iss. 4, art. 362
PID:20.500.12556/RUL-126567 This link opens in a new window
UDC:577
ISSN on article:2075-4450
DOI:10.3390/insects12040362 This link opens in a new window
COBISS.SI-ID:60749571 This link opens in a new window
Publication date in RUL:28.04.2021
Views:427
Downloads:124
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Record is a part of a journal

Title:Insects
Shortened title:Insects
Publisher:MDPI AG
ISSN:2075-4450
COBISS.SI-ID:519122457 This link opens in a new window

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.
Licensing start date:19.04.2021

Projects

Funder:ARRS - Agencija za raziskovalno dejavnost Republike Slovenije
Project number:V4-1804
Name:Ugotavljanje poti širjenja hude gnilobe čebelje zalege z genetsko tipizacijo sevov povzročitelja bolezni

Funder:ARRS - Agencija za raziskovalno dejavnost Republike Slovenije
Project number:P4-0092
Name:Zdravje živali, okolje in varna hrana

Funder:Drugi - Drug financer ali več financerjev
Funding programme:Republic of Slovenia, Ministry of Agriculture, Forestry and Food

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