Simulation of the COVID-19 epidemic on the social network of Slovenia: estimating the intrinsic forecast uncertainty

Zaplotnik, Žiga (avtor), Gavrić, Aleksandar (avtor), Medic, Luka (avtor)

In the article a virus transmission model is constructed on a implified social network. The social network consists of more than 2 million nodes, each representing an inhabitant of Slovenia. The nodes are organised and interconnected according to the real household and elderly-care center distribution, while their connections outside these clusters are semirandomly distributed and undirected. The virus spread model is coupled to the disease progression model. The ensemble approach with the perturbed transmission and disease parameters is used to quantify the ensemble spread, a proxy for the forecast uncertainty. The presented ongoing forecasts of COVID-19 epidemic in Slovenia are compared with the collected Slovenian data. Results show that at the end of the first epidemic wave, the infection was twice more likely to transmit within households/elderly care centers than outside them. We use an ensemble of simulations (N = 1000) and data assimilation approach to estimate the COVID-19 forecast uncertainty and to inversely obtain posterior distributions of model parameters. We found that in the uncontrolled epidemic, the intrinsic uncertainty mostly originates from the uncertainty of the virus biology, i.e. its reproduction number. In the controlled epidemic with low ratio of infected population, the randomness of the social network becomes the major source of forecast uncertainty, particularly for the short-range forecasts. Virus transmission models with accurate social network models are thus essential for improving epidemics forecasting.

• Jezik: Angleški jezik
• Ključne besede: COVID-19, epidemiology, Slovenia, social networks
• Tipologija: 1.01 - Izvirni znanstveni članek
• Organizacija: FMF - Fakulteta za matematiko in fiziko
• Status publikacije: Objavljeno
• Različica publikacije: Objavljena publikacija
• Leto izida: 2020
• Št. strani: 22 str.
• Številčenje: Vol. 15, art. e0238090
• PID: 20.500.12556/RUL-124022
• UDK: 616-036.22
• ISSN pri članku: 1932-6203
• DOI: 10.1371/journal.pone.0238090
• COBISS.SI-ID: 26780419
• Datum objave v RUL: 21.12.2020

Gradivo je del revije

• Naslov: PloS one
• Založnik: Public Library of Science
• ISSN: 1932-6203
• COBISS.SI-ID: 2005896

Licence

• Licenca: CC BY 4.0, Creative Commons Priznanje avtorstva 4.0 Mednarodna
• Povezava: http://creativecommons.org/licenses/by/4.0/deed.sl
• Opis: To je standardna licenca Creative Commons, ki daje uporabnikom največ možnosti za nadaljnjo uporabo dela, pri čemer morajo navesti avtorja.
• Začetek licenciranja: 21.12.2020

Sekundarni jezik

• Jezik: Slovenski jezik
• Ključne besede: koronavirus COVID-19, epidemije, socialne mreže, Slovenija

Projekti

• Financer: ARRS - Agencija za raziskovalno dejavnost Republike Slovenije
• Številka projekta: J1-9431
• Naslov: Prispevek Rossbyevih in inercijsko-težnostnih valov k vertikalni hitrosti in pretoku gibalne količine v ozračju

• Financer: ARRS - Agencija za raziskovalno dejavnost Republike Slovenije
• Številka projekta: P1-0188
• Naslov: Astrofizika in fizika atmosfere