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2. Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell ClassificationPavlin Gregor Poličar, 2019, magistrsko delo/naloga Ključne besede: batch effects, embedding, t-SNE, visualization, single-cell transcriptomics, data integration, domain adaptation
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3. Stress reshapes the physiological response of halophile fungi to salinityYordanis Pérez-Llano, Eya Caridad Rodríguez-Pupo, Irina S. Druzhinina, Komal Chenthamara, Feng Cai, Nina Gunde-Cimerman, Polona Zalar, Cene Gostinčar, Rok Kostanjšek, Jorge Luis Folch-Mallol, Ramón Alberto Batista-García, María del Rayo Sánchez-Carbente, 2020, izvirni znanstveni članek Ključne besede: Aspergillus sydowii, genome, fungal cell wall, compatible solutes, halophilic fungi, hydrophobins, fungal transcriptomics, osmotic stress
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4. Biomarkers of Fabry nephropathyTina Levstek, Bojan Vujkovac, Katarina Trebušak Podkrajšek, 2020, pregledni znanstveni članek Ključne besede: Fabry nephropathy, biomarkers, genomics, Fabry disease, nephropathy, epigenomics, metabolomics, proteomics, transcriptomics
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5. Transcriptomics of receptive endometrium in women with sonographic features of adenomyosisErika Prašnikar, Tanja Kunej, Mario Gorenjak, Uroš Potočnik, Borut Kovačič, Jure Knez, 2022, izvirni znanstveni članek Ključne besede: adenomyosis, assisted reproductive techniques (ART), data integration, endometrial receptivity, enrichment pathway analysis, omics approaches, RNA-seq, systems biology, transcriptomics, window of implantation
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6. Shed light in The daRk lineagES of the fungal tree of life—STRESLaura Selbmann, Nina Gunde-Cimerman, Monika Novak Babič, Polona Zalar, Jason Eric Stajich, 2020, drugi znanstveni članki Ključne besede: adaptation, black fungi, Dothideomycetes, Eurotiomycetes, extremophiles, genomics, metabolomics, secondary metabolites, stress conditions, transcriptomics
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7. Biotechnological methods for buckwheat breedingZlata Luthar, Primož Fabjan, Katja Mlinarič, 2021, pregledni znanstveni članek Ključne besede: transcriptomics, genomics, interspecific hybridization, tissue cultures, molecular markers, metabolites
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8. Algorithmically deduced FREM2 molecular pathway is a potent grade and survival biomarker of human gliomasMarianna Zolotovskaia, Alja Zottel, Neja Šamec, Ivana Jovchevska, 2021, izvirni znanstveni članek Ključne besede: glioma, glioblastoma, survival prognosis, FREM2, algorithmically deduced molecular pathway, transcriptomics
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9. Comprehensive transcriptome profiling of urothelial cells following TNFα stimulation in an in vitro interstitial cystitis/bladder pain syndrome modelTadeja Kuret, Dominika Peskar, Mateja Erdani-Kreft, Andreja Erman, Peter Veranič, 2022, izvirni znanstveni članek Ključne besede: interstitial cystitis, bladder pain syndrome, urothelial cells, inflammation, RNA sequencing, transcriptomics, proinflammatory cytokines
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10. Insight into the complexity of male infertilityRebeka Podgrajšek, Alenka Hodžić, Martin Štimpfel, Tanja Kunej, Borut Peterlin, 2024, pregledni znanstveni članek Ključne besede: genomics, epigenomics, transcriptomics, proteomics, male infertility
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