1. ERIC and WGS typing of Paenibacillus larvae in SloveniaAlenka Žugelj, Bojan Papić, Irena Zdovc, Urška Zajc, Majda Golob, Jana Avberšek, Darja Kušar, 2021, izvirni znanstveni članek Ključne besede: Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
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2. Genomic insights into the emergence and spread of methicillin-resistant Staphylococcus pseudintermedius in veterinary clinicsBojan Papić, Majda Golob, Irena Zdovc, Darja Kušar, Jana Avberšek, 2021, izvirni znanstveni članek Ključne besede: antimicrobial susceptibility testing, epidemiology, methicillin-resistant Staphylococcus pseudintermedius (MRSP), small animal clinic, whole-genome sequencing (WGS)
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3. Comparison of selected methods in bacteriological diagnostics and their use in bacterial typingKatarina Benulič, 2020, doktorsko delo/naloga Ključne besede: 16S rDNA PCR, real-time PCR, bacteria, syndromic testing, cultivation, ventilator-associated pneumonia, meningitis, arthritis, Klebsiella pneumoniae, whole-genome sequencing, WGS, NGS, resistance, carbapenemase, OXA-48, NDM, outbreak
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4. Feline otitis externa caused by methicillin-resistant Staphylococcus aureus with mixed hemolytic phenotype and overview of possible genetic backgroundsJana Avberšek, Bojan Papić, Darja Kušar, Vladimira Erjavec, Katja Seme, Majda Golob, Irena Zdovc, 2021, izvirni znanstveni članek Ključne besede: methicillin-resistant Staphylococcus aureus (MRSA), otitis externa, cat, whole-genome sequencing (WGS), mixed hemolysis, genetics, microbiology
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5. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operationBojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, izvirni znanstveni članek Ključne besede: Paenibacillus larvae, American foulbrood, AFB, whole-genome sequencing, WGS, whole-genome multilocus sequence typing, wgMLST, outbreak, beekeeping operation, molecular sequence data, genotype
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6. Genomic analysis reveals the presence of hypervirulent and fluoroquinolone-resistant Clostridioides difficile in farmed mussels (Mytilus galloprovincialis) in SloveniaUrška Henigman, Darja Kušar, Majda Biasizzo, Stanka Grebenc, Jana Avberšek, Bojan Papić, 2025, izvirni znanstveni članek Ključne besede: Mediterranean mussel, Mytilus galloprovincialis, mussel farm, Clostridioides difficile, whole-genome sequencing, WGS, antimicrobial resistance genes
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