1. Genome-wide transcriptomic analysis reveals insights into the response to Citrus bark cracking viroid (CBCVd) in hop (Humulus lupulus L.)Ajay Kumar Mishra, Atul Kumar, Deepti Mishra, Vishnu Sukumari Nath, Jernej Jakše, Tomáš Kocábek, Uday Kumar Killi, Filis Morina, Jaroslav Matoušek, 2018, izvirni znanstveni članek Ključne besede: Citrus bark cracking viroid, differentially expressed genes, hop, pathogen, transcriptome analysis, viroids
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2. Dissection of dynamic transcriptome landscape of leaf, bract, and lupulin gland in hop (Humulus lupulus L.)Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek, 2020, izvirni znanstveni članek Ključne besede: bitter acids, prenylflavonoids, terpenoids, trichome, Humulus lupulus, lupulin glands, RNA sequencing
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3. Evaluation of disease severity and global transcriptome response induced by Citrus bark cracking viroid, Hop latent viroid, and their co-infection in hop (Humulus lupulus L.)Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Vishnu Sukumari Nath, Jaroslav Matoušek, Jernej Jakše, 2019, izvirni znanstveni članek Ključne besede: Citrus bark cracking viroid, co-infection, differentially expressed genes, Humulus lupulus, Hop latent viroid, transcriptome profiling
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4. Mapping the gene expression spectrum of mediator subunits in response to viroid infection in plantsVishnu Sukumari Nath, Ankita Shrestha, Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Jaroslav Matoušek, Andrej Sečnik, Jernej Jakše, Sebastjan Radišek, Vipin Hallan, 2020, izvirni znanstveni članek Ključne besede: differential expression, hop, mediator complex, Nicotiana benthamiana, Nicotiana tabacum, pathogen, quantitative reverse transcription PCR, viroid
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5. Revisiting the role of transcription factors in coordinating the defense response against Citrus bark cracking viroid infection in commercial hop (Humulus lupulus L.)Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, Jaroslav Matoušek, Jernej Jakše, 2019, izvirni znanstveni članek Ključne besede: transcriptional reprogramming, viroid pathogenesis, hop stunt disease, management
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6. Integrated proteo-transcriptomic analyses reveal insights into regulation of pollen development stages and dynamics of cellular response to apple fruit crinkle viroid (AFCVd)-infection in Nicotiana tabacumAnkita Shrestha, Ajay Kumar Mishra, Jaroslav Matoušek, Lenka Steinbachová, David Potěšil, Vishnu Sukumari Nath, Praveen Awasthi, Tomáš Kocábek, Jernej Jakše, Lenka Záveská Drábková, Zbyněk Zdráhal, David Honys, Gerhard Steger, 2020, izvirni znanstveni članek Ključne besede: AFCVd propagation and eradication, viroid replication, viroid degradation, Nicotiana tabacum, male gametophyte, proteome, RNA sequencing, RT qPCR
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