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Molekulska raznolikost izolatov fitoplazme, povzročiteljice leptonekroze koščičarjev
ID Dolanc, Dorian (Author), ID Dermastia, Marina (Mentor) More about this mentor... This link opens in a new window, ID Mehle, Nataša (Co-mentor), ID Žgur Bertok, Darja (Reviewer)

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MD5: 495AECC4DA501DD4473C2B8B0581977E
PID: 20.500.12556/rul/cd40cbe9-061a-4f7d-96b0-adee2e6d32c9

Abstract
Fitoplazme so bakterije, ki spadajo v razred Mollicutes. V naravi naseljujejo floem rastlin, ter žuželke. So rastlinski patogeni, prenašajo in razširjajo jih žuželke, ki se hranijo s floemom rastlin. Candidatus Phytoplasma prunorum je karantenska rastlinska patogena bakterija iz skupine fitoplazem metličavosti jablan, ki na koščičarjih povzroča leptonekrozo (ESFY). Velik problem predstavlja sadjarjem, ker negativno vpliva na količino pridelka in posledično povzroča ekonomsko škodo. Glavni prenašalec fitoplazme je češpljeva bolšica Cacopsylla pruni (Scopoli). V magistrskem delu smo z molekularnimi metodami analizirali 20 vzorcev DNA te fitoplazme, ekstrahirane iz okuženih marelic ali breskev, in jih uvrstili v eno od genskih podskupin. Ugotovili smo, da na podlagi gena aceF, v Sloveniji razlikujemo štiri genotipe, na podlagi gena secY dva, na podlagi gena pnp enega, ter na podlagi gena imp pet genotipov. S pomočjo analize zaporedij več lokusov smo odkrili sedem različnih haplotipov Ca. P. prunorum. Na podlagi dobljenih rezultatov lahko zaključimo, da je genska raznolikost Ca. P. prunorum v Sloveniji visoka. Analizirali smo tudi 42 vzorcev DNA izolirane iz C. pruni in dokazali, da vsi vzorci vrstnega kompleksa C. pruni spadajo v genetsko skupino B.

Language:Slovenian
Keywords:bolezni rastlin, fitoplazme, Candidatus Phytoplasma punorum, sadjarstvo, koščičarji, leptonekroza, ESFY, molekularne metode, sekvenciranje, ugnezdena PCR, MLSA, genetska raznolikost, genotip, haplotip
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Publisher:[D. Dolanc]
Year:2017
PID:20.500.12556/RUL-91518 This link opens in a new window
UDC:632:634.2:543.9
COBISS.SI-ID:4774008 This link opens in a new window
Publication date in RUL:16.04.2017
Views:1655
Downloads:435
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Secondary language

Language:English
Title:Molecular diversity of phytoplasma isolates, the causative agent of leptonecrosis
Abstract:
Phytoplasmas are bacteria, which belong to the class Mollicutes. In nature they inhabit insects and phloem of plants. They are plant pathogens transmitted and disseminated by sap feeding insects. Candidatus Phytoplasma prunorum is a quarantine plant pathogen bacteria belonging to the apple proliferation group. It is the causative agent of leptonecrosis of stone fruits. Because of its negative impact on fruit yield, it presents a major problem for fruit growers. Consequently, this results in significant economic damage. The main transmission vector of Ca. P. prunorum is Cacopsylla pruni (Scopoli). Using molecular methods we analyzed 20 samples of apricots and peaches, infected with the phytoplasma and classified them into one of the genetic subgroups. All the samples were collected in Slovenia. On the basis of the gene aceF we distinguished four genotypes, on the basis of gene secY two genotypes, on the basis of gene pnp one, and on the basis of gene imp five different genotypes. Additionally, we made a multilocus sequence analysis and found seven different haplotypes of Ca. P. prunorum. Based on the results we can conclude that the genetic diversity of Ca. P. prunorum in Slovenia is high. Additionally, we analyzed 42 DNA samples, that were extracted from C. pruni and demonstrated that all of the samples from the C. pruni complex belong to the genetic group B.

Keywords:plant diseases, phytoplasmas, Candidatus Phytoplasma prunorum, fruit growing, stone fruits, leptonecrosis, ESFY, molecular methods, sequencing, nested PCR, MLSA, genetic diversity, genotype, haplotype

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