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Introducing mothur : open-source, platform-independent, community-supported software for describing and comparing microbial communities
ID Schloss, Patrick D. (Author), ID Westcott, Sarah L. (Author), ID Ryabin, Thomas (Author), ID Hall, Justine R. (Author), ID Hartmann, Martin (Author), ID Hollister, Emily B. (Author), ID Lesniewski, Ryan A. (Author), ID Oakley, Brian B. (Author), ID Parks, Donovan H. (Author), ID Robinson, Courtney J. (Author), ID Sahl, Jason W. (Author), ID Stres, Blaž (Author), ID Thallinger, Gerhard G. (Author), ID Horn, David J. van (Author), ID Weber, Caroly F. (Author)

URLURL - Presentation file, Visit http://aem.asm.org/cgi/reprint/AEM.01541-09v1?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&author1=Stres%2C+B.&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT This link opens in a new window

Abstract
Mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur totrim, screen, and align sequences, calculate distances, assign sequences to OTUs, and describe that alfa-and ß-diversity of eight marine samples previously characterized by pyrpsequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 hours using laptop computer.

Language:English
Keywords:mikrobiologija, mikrobne združbe, bioinformatika, mothur
Work type:Not categorized
Typology:1.01 - Original Scientific Article
Organization:BF - Biotechnical Faculty
Year:2009
Number of pages:Str. 7537-7541
Numbering:Vol. 75, No. 23
PID:20.500.12556/RUL-36506 This link opens in a new window
UDC:579
ISSN on article:0099-2240
DOI:10.1128/AEM.0541-09 This link opens in a new window
COBISS.SI-ID:2517640 This link opens in a new window
Publication date in RUL:10.07.2015
Views:3171
Downloads:323
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Record is a part of a journal

Title:Applied and environmental microbiology
Shortened title:Appl. environ. microbiol.
Publisher:American Society for Microbiology
ISSN:0099-2240
COBISS.SI-ID:5133319 This link opens in a new window

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