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Heterologna amilaza kot označevalec za semikvantitativno merjenje izločanja proteinov iz celic Saccharomyces cerevisiae.
ID Torej, Vito (Author), ID Petrovič, Uroš (Mentor) More about this mentor... This link opens in a new window, ID Gostinčar, Cene (Comentor)

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Abstract
Kvasovka Saccharomyces cerevisiae se kot produkcijski organizem za rekombinantne proteine uporablja že vrsto let. Ena izmed pomembnejših lastnosti organizmov, ki se uporabljajo za proizvodnjo proteinov, je sposobnost njihovega izločanja, saj to olajša proces pridobivanja proizvedenih proteinov. V magistrski nalogi smo želeli razviti visokozmogljivo in semikvantitativno metodo, s katero bi lahko spremljali sposobnost izločanja proteinov iz celic S. cerevisiae. Sprva smo morali izbrati primeren encim, s pomočjo katerega bi lahko na trdnih agarskih gojiščih spremljali izločanje modelnega proteina, ter sposobnost izločanja semikvantitativno ovrednotili na podlagi določanja aktivnosti tega encima. Kot najprimernejši encim se je izkazala amilaza, katere aktivnost lahko na gojiščih z dodatkom škroba spremljamo na podlagi nastanka cone zbistritve po izpostavitvi jodovim param. V nadaljevanju smo s pomočjo PCR sestavili gensko kaseto, ki je vsebovala heterologno amilazo in jo s homologno rekombinacijo vstavili v genom kvasovke na mesto gena LYP1. Sledilo je križanje seva, ki je kaseto vseboval, s sevom, ki kasete ni vseboval. Pridobljene segregante smo presejali glede na amilazno aktivnost ter jih v končni fazi eksperimenta med seboj primerjali z namenom določitve segregante z največjo sposobnostjo izločanja heterolognih proteinov. Razvita metoda se je izkazala za obetavno, vendar so za njeno nadaljnjo optimizacijo potrebne dodatne raziskave in poskusi, s katerimi bi lahko potrdili praktično uporabnost pridobljenih rezultatov.

Language:Slovenian
Keywords:kvasovka, izločanje, amilaza, cona zbistritve, križanje
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Year:2026
PID:20.500.12556/RUL-190646 This link opens in a new window
COBISS.SI-ID:304250115 This link opens in a new window
Publication date in RUL:31.10.2026
Views:56
Downloads:15
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Secondary language

Language:English
Title:Heterologous amylase as a marker for semi-quantitative measurement of protein secretion from Saccharomyces cerevisiae cells.
Abstract:
The yeast Saccharomyces cerevisiae has been used as a production organism for recombinant proteins for many years. One of the most important characteristics of organisms used for protein production is their secretion capacity, as secretion facilitates the recovery of produced proteins. In this master’s thesis, we aimed to develop a high-throughput, semi-quantitative method for assessing the protein secretion capacity of S. cerevisiae cells. First, a suitable enzyme had to be selected as a model that would enable protein secretion to be monitored on solid agar media and secretion capacity to be semi-quantitatively evaluated based on the enzyme activity. An amylase proved to be the most suitable enzyme, as its activity can be monitored on starch-containing media by the formation of a clearance zone following exposure to iodine vapour. Subsequently, a gene cassette, containing the selected amylase was assembled by PCR and integrated into the yeast genome at the LYP1 locus by homologous recombination. This was followed by mating of a strain which contained the assembled gene cassette, with a strain, which did not contain the gene cassette. The resulting segregants were screened for amylase activity and, in the final stage of the experiment, compared to identify the segregant with the highest capacity for heterologous protein secretion. The developed method showed promising results; however, further research and experiments are required to optimize the method and confirm the applicability of the obtained results.

Keywords:yeast, secretion, amylase, clearance zone, mating

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