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Karakterizacija jedrnega uvoza proteina ORF1p retrotranspozona LINE-1
ID Pervanja, Ana (Author), ID Župunski, Vera (Mentor) More about this mentor... This link opens in a new window

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Abstract
Dolgi razpršeni jedrni element 1 (LINE-1) je edini še aktivni retrotranspozon pri človeku in vsebuje zapisa za proteina ORF1p in ORF2p. Retrotranspozicija poteka po principu 'kopiraj in prilepi'. To pomeni, da se LINE-1 v jedru najprej prepiše v mRNA. Po prenosu v citoplazmo se prevede v proteine, ki z lastno mRNA tvorijo ribonukleoproteinski kompleks in se prenesejo nazaj v jedro. Tam nato poteka retrotranspozicija po principu na tarčnem mestu začete reverzne transkripcije. Znano je, da proces poteka tudi v nedelečih se celicah, npr. nevronih, zato morajo ORF1p, ORF2p in mRNA LINE-1 prehajati v jedro. Namen magistrskega dela je bil ugotoviti, kakšen je mehanizem jedrnega uvoza ORF1p. Najprej smo v bakterijah E. coli izrazili in izolirali rekombinantne proteine ORF1p, jedrni lokalizacijski signal velikega T-antigena iz opičjega virusa 40, karioferin alfa 6 (KPNA6), karioferin beta 1 (KPNB1) in Ran. Vsi so imeli na N-koncu fuzijo glutation-S-transferaze. Jedrni prenos smo preučevali s testom jedrnega uvoza, pri katerem smo celicam HeLa selektivno permeabilizirali celično membrano. Po odstranitvi citoplazme smo jedrom dodali uvozne mešanice, ki so vsebovale rekombinantni protein ORF1p, faktorje za vnos v jedro in sistem za vzdrževanje ravni ATP. Kot faktor za vnos v jedro smo najprej uporabili retikulocitni lizat in dokazali, da ORF1p v jedro prehaja aktivno ter da je prenos odvisen od prisotnosti karioferinov. Nato smo retikulocitni lizat nadomestili s posameznimi karioferini in proteinom Ran. Rezultati teh eksperimentov nakazujejo, da jedrni uvoz ORF1p verjetno poteka ob sodelovanju kompleksa KPNA6/KPNB1. Dobljeni rezultati prispevajo k razumevanju mehanizma jedrnega transporta ORF1p in s tem uravnavanja procesa retrotranspozicije LINE-1.

Language:Slovenian
Keywords:ORF1p, test jedrnega uvoza, karioferini
Work type:Master's thesis/paper
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2026
PID:20.500.12556/RUL-187011 This link opens in a new window
Publication date in RUL:08.09.2026
Views:95
Downloads:32
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Secondary language

Language:English
Title:Characterization of LINE-1 ORF1p nuclear import
Abstract:
Long interspersed nuclear element-1 (LINE-1) is the only currently active retrotransposon in humans and encodes the proteins ORF1p and ORF2p. Retrotransposition proceeds via a ‘copy-and-paste’ mechanism. This means that LINE-1 is first transcribed into mRNA within the nucleus. Following export to the cytoplasm, it is translated into proteins that form a ribonucleoprotein complex with their own mRNA and are transported back into the nucleus. There, retrotransposition occurs via target-primed reverse transcription. Since this process is known to take place in non-dividing cells—such as neurons—ORF1p, ORF2p, and LINE-1 mRNA must be able to enter the nucleus. The aim of this master's thesis was to elucidate the mechanism of ORF1p nuclear import. First, we expressed and isolated the following recombinant proteins in E. coli: ORF1p, the nuclear localization signal of the simian virus 40 large T antigen, karyopherin alpha 6 (KPNA6), karyopherin beta 1 (KPNB1), and Ran. All constructs carried an N-terminal glutathione S-transferase fusion tag. Nuclear transport was investigated using a nuclear import assay, in which the plasma membrane of HeLa cells was selectively permeabilized. After removing the cytoplasm, we added import mixtures to the nuclei containing the recombinant ORF1p protein, nuclear import factors, and an ATP-regenerating system. We first used reticulocyte lysate as a nuclear import factor and demonstrated that ORF1p actively enters the nucleus and that this transport depends on the presence of karyopherins. We then replaced the reticulocyte lysate with individual karyopherins and Ran. The results of these experiments suggest that the nuclear import of ORF1p likely involves the KPNA6/KPNB1 complex. These results contribute to an understanding of the mechanism of ORF1p nuclear transport and, consequently, the regulation of the LINE-1 retrotransposition process.

Keywords:ORF1p, nuclear import assay, karyopherins

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