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Magnezij kot modulator alfa-aktinina
ID Marinko, David (Author), ID Pavšič, Miha (Mentor) More about this mentor... This link opens in a new window

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Abstract
α-aktinin je protein, ki s svojo sposobnostjo prečnega povezovanja sodeluje pri organizaciji aktinskega citoskeleta. Nemišična α-aktinina, ACTN1 ter ACTN4, na C-končnem delu vsebujeta kalmodulinu-podobno domeno (CaMD), sestavljeno iz štirih EF-dlani. Medtem ko je vezava Ca2+-ionov na CaMD dobro opisana, je vpliv Mg2+-ionov na to domeno manj raziskan. Namen diplomskega dela je bil raziskati interakcijo med Mg2+-ioni in rekombinatnima CaMD-domenama človeških α-aktininov ACTN1 in ACTN4. Proteina smo izrazili v bakterijskem sistemu in izolirali s kombinacijo kromatografskih metod. Interakcijo med Mg2+-ioni in posamezno CaMD smo preučevali z izotermno titracijsko kalorimetrijo (ITC),vpliv Mg2+ in Ca2+-ionov na termično stabilnost proteinov pa z DLS, nanoDSF in spektroskopijo cirkularnega dikroizma (CD). Na podlagi strukturnih in koordinacijskih razlik med Ca2+ in Mg2+-ioni smo predvidevali, da bo vezava Mg2+-ionov na CaMD ACTN1 in ACTN4 šibka, oziroma nespecifična. Rezultati ITC niso pokazali jasne vezavne izoterme, ki bi lahko omogočala zanesljivo določitev termodinamskih parametrov vezave. Opaženi toplotni signali so najverjetneje posledica nespecifičnih elektrostatskih interakcij med Mg2+-ioni in negativno nabito površino proteina. Meritve pri nanoDSF so pokazale linearno naraščanje razmerja fluorescence 350 nm/330 nm. To ne kaže na denaturacijo proteina, vendar se pri meritvah velikosti delcev lahko opazi rahel prevoj, ki bi lahko pomenil denaturacijo. Ta prevoj je pri vseh vzorcih pri približno enaki temperaturi. Meritve CD so pokazale stabilizacijo strukture ob prisotnosti Ca2+-ionov. Rezultati potrjujejo hipotezo, da se Mg2+-ion na CaMD α-aktinina-1 in 4 veže nespecifično in z bistveno nižjo afiniteto kot Ca2+-ion.

Language:Slovenian
Keywords:α-aktinin, CaMD, magnezij, vezava
Work type:Bachelor thesis/paper
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2026
PID:20.500.12556/RUL-186704 This link opens in a new window
Publication date in RUL:04.09.2026
Views:109
Downloads:14
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Secondary language

Language:English
Title:Magnesium as a modulator of alpha-actinin
Abstract:
α-actinin is a protein that, through its actin cross-linking activity, contributes to the organization of the actin cytoskeleton. The non-muscle α-actinin proteins, ACTN1 and ACTN4, contain a calmodulin-like domain (CaMD) at their C-terminus, composed of four EF-hand motifs. While Ca2+-binding to the CaMD is well described, the effect of Mg2+-ions on this domain is less well understood. The aim of this work was to investigate the interaction between Mg2+-ions and the recombinant CaMD domains of human α-actinins ACTN1 and ACTN4. Both proteins were expressed in a bacterial system and purified using a combination of chromatographic methods. The interaction between Mg2+-ions and each CaMD was studied by isothermal titration calorimetry (ITC), while the effect of Mg2+ and Ca2+-ions on protein thermal stability was assessed by DLS, nanoDSF and circular dichroism spectroscopy (CD). Based on structural and coordination differences between Ca2+ and Mg2+-ions, we hypothesized that Mg2+-binding to the CaMD of ACTN1 and ACTN4 would be weak or non-specific. ITC results did not show a clear binding isotherm that would allow reliable determination of thermodynamic binding parameters. The observed heat signals are most likely the result of non-specific electrostatic interactions between Mg2+-ions and the negatively charged protein surface. nanoDSF measurements showed a linear increase in the 350 nm/330 nm fluorescence ratio. This does not indicate protein denaturation, however, particle size measurements show a slight inflection, though at approximately the same temperature for all samples. CD measurements showed stabilization of the structure in the presence of Ca2+-ions. The results confirm the hypothesis that Mg2+-ions binds nonspecifically to the CaMD of α-actinin-1 and 4, with substantially lower affinity than Ca2+-ions.

Keywords:α-actinin, CaMD, magnesium, binding

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