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Analiza vezave proteinov družine FHL na β-katenin
ID Šegota, Luka (Author), ID Gaber, Aljaž (Mentor) More about this mentor... This link opens in a new window

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Abstract
Signalna pot Wnt ima ključno vlogo pri uravnavanju celične proliferacije, diferenciacije in homeostaze tkiv. Njena deregulacija je tesno povezana z razvojem številnih rakavih obolenj. Osrednji mediator kanonične poti Wnt je protein β-katenin, ki v jedru deluje kot transkripcijski koaktivator in s tem uravnava izražanje tarčnih genov. Med njegovimi vezavnimi partnerji je tudi protein FHL2 (angl. four and a half LIM domain protein 2). Kljub biološkemu pomenu kompleksa β-katenin: FHL2, molekularni mehanizmi njune interakcije še niso v celoti pojasnjeni. FHL2 je eden izmed štirih strukturno sorodnih članov družine FHL (FHL1, FHL3 in FHL5), katerih primerjava omogoča vpogled v strukturne in funkcionalne dejavnike, ki določajo specifičnost vezave na β-katenin. V eksperimentalnem delu smo najprej pripravili rekombinantne proteinske konstrukte za člane družine FHL ter vzpostavili oziroma optimizirali protokole njihovega izražanja v bakterijskem ekspresijskem sistemu in čiščenja. Posebno pozornost smo namenili proteinu FHL5, ki je kazal izrazito nizko topnost, zato smo preizkusili različne pogoje izražanja in lize, vključno s prilagoditvijo pH, spreminjanjem koncentracije Zn²⁺ ionov ter uporabo plazmida pRARE2. Po pridobitvi zadostnih količin proteinov smo njihove interakcije z β kateninom analizirali z izotermno titracijsko kalorimetrijo (ITC) in gelsko izključitveno kromatografijo sklopljeno z detektorjem za statično sipanje svetlobe (SEC SLS), kar nam je omogočilo oceno afinitete in stabilnosti potencialnih kompleksov. Eksperimentalne analize smo dopolnili z bioinformacijskimi pristopi: s primerjavo zaporedij, oceno topnostnega potenciala, analizo elektrostatskih lastnosti ter primerjavo napovedanih tridimenzionalnih modelov domen LIM. Uspelo nam je očistiti zadostno količino proteinov FHL1 in FHL3, kar je omogočilo njuno uporabo v interakcijskih analizah. Izplen topnega FHL5 je ostal omejen in je predstavljal glavno eksperimentalno omejitev. Interakcijske študije so pokazale, da kompleks FHL3:β katenin tvori šibkejšo in prehodno interakcijo z ocenjeno disociacijsko konstanto v velikostnem razredu približno 10 µM ali šibkejše, medtem ko za FHL1 vezave nismo zaznali. Zaradi omejene razpoložljivosti FHL5 njegove vezave nismo mogli eksperimentalno ovrednotiti. Rezultati so pokazali, da se člani družine FHL razlikujejo v izražanju, topnosti in interakcijskem obnašanju, bioinformacijske analize pa, da so domene LIM strukturno ohranjene, medtem ko se razlikujejo predvsem v površinskih lastnostih. Ugotovili smo, da se LIM domene bolj združujejo glede na svojo pozicijo kot glede na pripadnost posameznemu proteinu, kar podpira modularno evolucijo teh proteinov. Razlike v izoelektričnih točkah domen in celotnih proteinov dodatno kažejo na različne elektrostatske profile, ki lahko prispevajo k razlikam v interakcijah z β-kateninom.

Language:Slovenian
Keywords:proteinske interakcije, proteinska družina FHL, β‑katenin, ITC, SEC-SLS
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2026
PID:20.500.12556/RUL-182234 This link opens in a new window
COBISS.SI-ID:277487875 This link opens in a new window
Publication date in RUL:04.05.2026
Views:96
Downloads:26
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Secondary language

Language:English
Title:Analysis of interaction between FHL family proteins and β-catenin
Abstract:
The Wnt signalling pathway plays a crucial role in the regulation of cell proliferation, differentiation, and tissue homeostasis. Its dysregulation is closely associated with the development of numerous cancers. The central mediator of the canonical Wnt pathway is β catenin, which functions as a transcriptional co-activator regulating the expression of target genes. Among its binding partners is FHL2 (four and a half LIM domain protein 2). Despite the biological importance of the β-catenin:FHL2 complex, the molecular mechanisms underlying their interaction remain poorly understood. FHL2 is one of four structurally related members of the FHL protein family (FHL1, FHL3, and FHL5), and their comparison provides insight into the structural and functional determinants that govern the specificity of β-catenin binding. We prepared recombinant protein constructs of FHL family members. Expression and purification protocols were established or optimized using a bacterial expression system. Particular attention was given to FHL5, which exhibited markedly low solubility; therefore, various expression and lysis conditions were tested, including pH adjustment, modulation of Zn²⁺ ion concentration, and the use of the pRARE2 plasmid. After obtaining sufficient amounts of purified proteins, their interactions with β catenin were analysed using isothermal titration calorimetry (ITC) and size exclusion chromatography coupled with static light scattering (SEC-SLS), enabling the assessment of binding affinity and complex stability. The experimental analyses were complemented by bioinformatic approaches such as sequence comparison, solubility prediction, electrostatic property analysis, and comparison of predicted three-dimensional models of LIM domains. Sufficient quantities of purified FHL1 and FHL3 were obtained for interaction analyses, whereas the yield of soluble FHL5 remained limited and represented the main experimental constraint. Interaction studies demonstrated that the FHL3:β-catenin complex forms a weak and transient interaction with an estimated dissociation constant in the 10 µM range or weaker. No specific binding was detected for FHL1. Due to the limited availability of FHL5, its interaction with β-catenin could not be evaluated. The results showed that FHL proteins differ in their expression, solubility and interaction behaviour, while bioinformatic analyses demonstrated that LIM domains are structurally conserved but differ mainly in the surface properties. We found that LIM domains cluster according to their positional identity rather than protein origin, supporting the modular evolution of these proteins. Differences in the isoelectric points of individual domains and full-length proteins further indicate distinct electrostatic profiles that may contribute to differences in interactions with β-catenin.

Keywords:protein-protein interactions, protein family FHL, β‑catenin, ITC, SEC-SLS

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