High content analysis of 3D chondrogenic pellets derived from primary cells in vitro : research data underlying the article

Voga, Lucija (author), Burnik, Tilen (author), Kandušer, Maša (author), Jeras, Matjaž (author), Zupan, Janja (author), Trojner-Bregar, Andreja (author)

Primary cells derived from connective tissues contain mesenchymal stem/stromal cell (MSC)–like progenitors with chondrogenic potential relevant for cartilage repair. However, donor and tissue specific variability and the lack of robust, high throughput analytical methods limit their translational use. Objectives: This study aimed to develop and optimize a high content imaging workflow for quantitative evaluation of chondrogenesis in three dimensional (3D) pellets derived from primary cells. Methods: Primary human cells isolated from cartilage were chondrogenically differentiated in vitro. A systematic optimization of immunofluorescence staining parameters was performed, including staining platform, enzymatic matrix digestion, non specific site blocking, membrane permeabilization, and nuclear counterstaining. Type II collagen was detected using an Alexa Fluor 488–conjugated antibody, and pellets were analyzed using high content non-confocal imaging. Fluorescence intensities were adjusted to pellet area to account for size dependent effects. Results: Staining directly in imaging plates enabled streamlined high content analysis. Controlled pepsin mediated matrix digestion markedly enhanced antibody penetration, while excessive digestion compromised pellet integrity. Extended bovine serum albumin blocking improved type II collagen signal intensity and homogeneity. Triton X 100 permeabilization increased detection sensitivity but occasionally induced structural disruption in weakly organized control spheroids. The optimized protocol enabled clear discrimination between chondrogenic pellets and controls, with approximately threefold higher type II collagen signal in chondrogenic samples. Conclusions: This study establishes a high content imaging–based workflow for quantitative assessment of 3D chondrogenesis from primary cells. The approach provides a rapid, scalable platform with direct relevance for in vitro screening, potency testing, and quality control in cartilage oriented advanced therapy development.

• Language: English
• Keywords: primary MSCs, 3D chondrogenesis, pellets, high-content analysis, type II collagen, immunofluorescence
• Typology: 2.20 - Complete scientific database of research data
• Organization: FFA - Faculty of Pharmacy
• Year: 2026
• PID: 20.500.12556/RUL-182207
• Data col. methods: Measurements and tests
• Publication date in RUL: 18.05.2026

Licences

• License: CC BY 4.0, Creative Commons Attribution 4.0 International
• Link: http://creativecommons.org/licenses/by/4.0/
• Description: This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

• Language: Slovenian
• Keywords: primarne MSC, 3D hondrogeneza, peleti, avtomatizirana kvantitativna analiza mikroskopskih slik, kolagen tipa II, imunofluorescenca