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Vzpostavitev protokola transformacije hmelja (Humulus lupulus) za tarčno preurejanje genoma s tehnologijo CRISPR/Cas9
ID Rotar, Jerneja (Author), ID Štajner, Nataša (Mentor) More about this mentor... This link opens in a new window, ID Stajič, Ester (Comentor)

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Abstract
Magistrsko delo je bilo zastavljeno z namenom vzpostavitve protokola transformacije štirih sort hmelja, 'Celeia', 'Styrian Eureka', 'Styrian Kolibri' in 'Wye target', za tarčno preurejanje genoma s tehnologijo CRISPR/Cas9. Preizkušali smo tri različna gojišča, ki so se razlikovala po vsebnosti in koncentraciji hormonov in tri tipe izsečkov, listni pecelj, internodij in izseček listne ploskve. Pogoji za določanje najboljših kombinacij je bila uspešnost regeneracije, pri čemer smo opazovali tvorbo kalusa, zelenega kalusa ter razvoj poganjkov. Pri iskanju najboljše kombinacije sorte, gojišča in tipa izsečka smo opazili razlike med samo ustreznostjo gojišča in tipa izsečkov glede na sorto. Za največ sort je bilo najbolj primerno gojišče z dodatkom 1 mg/l TDZ in 0,025 mg/l IAA, med izsečki pa je bil najbolj odziven internodijski izseček. Za nadaljni poskus transformacije hmelja smo izločili izsečke listne ploskve, saj je bila njihova regeneracija najslabša, in uporabili izsečke listnega peclja in internodije. Za transformacijo smo nato izbrali po dve kombinaciji gojišča in izsečeka, za vsako sorto, ter izbrane transgene ZsGreen, hptII in Cas9 na plazmidu pHSE-Zsg-sgHlPDS1 vnesli v celice hmelja s pomočjo bakterije Agrobacterium tumefaciens. Med regeneracijo izsečkov smo uspešnost transformacije spremljali z epiflourestentno lupo. Za preverjanje prisotnosti transgenov smo izvedli PCR analizo ter agarozno elektroforezo. Transgen ZsGreen je bil med vsemi transgeni najpogosteje zastopan pri testiranih vzorcih, s kar 90 % prisotnostjo. Pomnožke transgena Cas9 je bilo moč zaznati pri 80 % testiranih vzorcev, transgen hptII pa je bil prisoten pri 65 % vzorcev. Primerjava odstotka regeneracije brez transformacije in po transformaciji je pokazala očitno razliko, saj so se izsečki po transformaciji veliko slabše regenerirali. Z nalogo lahko potrdimo, da je uspešnost transformacije in regeneracije zelo odvisna od same kombinacije sorte, gojišča in tipa izsečka.

Language:Slovenian
Keywords:Agrobacterium tumefaciens, CRISPR/Cas9, gensko preurejanje, hmelj, mikropropagacija
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Year:2026
PID:20.500.12556/RUL-179133 This link opens in a new window
COBISS.SI-ID:267641859 This link opens in a new window
Publication date in RUL:06.02.2026
Views:210
Downloads:47
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Secondary language

Language:English
Title:Establishment of a hop (Humulus lupulus) transformation protocol for target genomerearrangement using CRISPR/Cas9 technology
Abstract:
The master's thesis was designed with the aim of establishing a protocol for the transformation of four hop varieties, 'Celeia', 'Styrian Eureka', 'Styrian Kolibri' and 'Wye target', for targeted genome editing using CRISPR/Cas9 technology. We tested three different culture media, which varied in hormone content and concentration, and three types of explants: petiole, internode, and leaf explants. The criteria for determining the best combinations were regeneration success, observing callus formation, green callus development, and shoot formation. In the search for the best combination of cultivar, culture medium, and explant type, we observed differences among the cultivars, media, and explant types. For most cultivars, the most suitable medium was the one supplemented with 1 mg/L TDZ and 0.025 mg/L IAA, and among the explants, the internodal explant was the most responsive. For further hop transformation experiments, we excluded the leaf explants due to their poor regeneration and used petiole and internode explants instead. For the transformation, we selected two medium-explant combinations for each variety and introduced the selected transgenes ZsGreen, hptII, and Cas9 on the plasmid pHSE-Zsg-sgHlPDS1 into hop cells using the bacterium Agrobacterium tumefaciens. During explant regeneration, we monitored transformation success using an epifluorescence microscope. To verify the presence of transgenes, we performed PCR analysis and agarose gel electrophoresis. Among all the transgenes, ZsGreen was the most frequently detected in the tested samples, with a 90 % presence rate. The Cas9 transgene was detected in 80 % of the samples, and hptII was present in 65 % of the samples. A comparison of regeneration rates before and after transformation showed a clear difference, as explants regenerated much less successfully after transformation. This study confirms that the success of transformation and regeneration is highly dependent on the specific combination of cultivar, culture medium, and explant type.

Keywords:Agrobacterium tumefaciens, CRISPR/Cas9, genetic editing, hops, micropropagation

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