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Metodologija in primeri uporabe prostorske transkriptomike
ID Davidovska, Zorica (Author), ID Kunej, Tanja (Mentor) More about this mentor... This link opens in a new window

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Abstract
Prostorska transkriptomika je metoda, ki omogoča analizo prostorske organizacije izražanja genov v tkivu. Različne metode, ki temeljijo na mikrodisekciji, sekvenciranju in situ, barkodnem slikanju, prostorskem zajemanju ali na izbiri ciljne regije, se razvijajo in uporabljajo za študije razvojne biologije, raka, nevroznanosti, patologije in številnih drugih področij biologije. Metodološki pristopi prostorske transkriptomike pomagajo pri boljšem razumevanju splošne genetike, različic zaporedja in vplivov diferencialnega izražanja genov na delovanje celic v njihovem okolju. Ti pristopi pomagajo prepoznati molekularne označevalce in mehanizme, s katerimi celice medsebojno delujejo in komunicirajo. Možnosti preučevanja celic in njihove genske informacije z visoko ločljivostjo ter sočasnim zajemanjem podatkov (multipleksiranjem) omogočajo vpogled v heterogenost bioloških vzorcev, kar je pomembno prispevalo k odkrivanju in raziskovanju določenih bolezni. Diplomsko delo obravnava metode prostorske transkriptomike in njihove primere uporabe, ki so dosegli pomembne rezultate na področju genetike.

Language:Slovenian
Keywords:transkriptomika, sekvenciranje RNA na ravni posamezne celice, analiza izražanja genov, lokalizacija celic, rak, nevroznanost, genomika, proteomika
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:BF - Biotechnical Faculty
Year:2025
PID:20.500.12556/RUL-173745 This link opens in a new window
COBISS.SI-ID:249763075 This link opens in a new window
Publication date in RUL:21.09.2025
Views:482
Downloads:86
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Secondary language

Language:English
Title:Spatial transcriptomics: description of methods and examples of applications
Abstract:
Spatial transcriptomics is a method that enables the analysis of the spatial organization of gene expression within tissue. Various methods based on microdissection, imaging, barcode labelling, spatial capture, or target region selection are being developed and used for studies in developmental biology, cancer, neuroscience, pathology and many other areas of biology. The methodological approaches of spatial transcriptomics are increasingly contributing to a better understanding of general genetics, sequence variants and the effects of differential gene expression on the function of cells in their environment. These approaches help to identify molecular markers and mechanisms by which cells interact and communicate with each other. The possibilities of studying cells and their genetic information with high resolution and multiplexing provide insight into the heterogeneity of biological samples, which has so far greatly helped in the discovery and research of certain diseases. This thesis examines methods of spatial transcriptomics and their applications that have achieved significant advances in the field of genetics.

Keywords:transcriptomics, single-cell RNA sequencing, gene expression analysis, cell localization, cancer, neuroscience, genomics, proteomics

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