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Identifikacija škodljive vrste trzač iz Sečoveljskih solin na osnovi črtne kode DNA
ID Klinar, Brina (Author), ID Dolinar, Marko (Mentor) More about this mentor... This link opens in a new window

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Abstract
Glavni element tradicionalnega pridobivanja soli v Sečoveljskih solinah je petola – nekaj milimetrov debela mikrobna plast, ki omogoča pobiranje kakovostne in čiste soli. V zadnjih letih se je pokazalo, da so eden od škodljivcev, ki petolo uničujejo, trzače (Chironomidae) oziroma njihove ličinke. Metoda črtne kode DNA je molekularna metoda, ki predstavlja komplementarno ali alternativno metodo klasičnim biološkim pristopom. Temelji na specifičnih regijah DNA, ki so znotraj vrste dovolj ohranjene, med vrstami pa dovolj različne, da lahko na podlagi njihovih nukleotidnih zaporedij sklepamo o vrsti organizma. Za večino živalskih vrst je najbolj uporabna črtna koda DNA na 5'-koncu gena za podenoto 1 citokrom oksidaze c (COI). V diplomskem delu smo 13 odraslim trzačam, ki so bile maja 2024 vzorčene v okolici kristalizacijskih bazenov v Sečoveljskih solinah, določili spol na podlagi očitnejših morfoloških značilnosti. Izolirali smo celokupno DNA osebkov in regijo COI pomnožili z uporabo prilagojenih Folmerjevih začetnih oligonukleotidov LCO1490' in HCO2198'. Pomnožke smo nato vstavili v vektor, te pa smo klonirali v bakterijah in jih pripravili za določanje nukleotidnega zaporedja. Z analizo dobljenih nukleotidnih zaporedij smo ugotovili, da vsi vzorci pripadajo rodu Chironomus. Trem vzorcem smo nedvoumno določili vrsto Chironomus salinarius, na podlagi genetskih razdalj med nukleotidnimi zaporedji pa smo sklepali, da tej vrsti verjetno pripadajo vsi analizirani vzorci. Ovrgli smo predhodno domnevo, da trzače, ki se v Sečoveljskih solinah v velikem številu pojavljajo v spomladanskem času, pripadajo vrsti Halocladius varians.

Language:Slovenian
Keywords:petola, trzače, Chironomidae, črtna koda DNA, Chironomus salinarius
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2025
PID:20.500.12556/RUL-172529 This link opens in a new window
COBISS.SI-ID:255216131 This link opens in a new window
Publication date in RUL:08.09.2025
Views:160
Downloads:34
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Secondary language

Language:English
Title:Identification of a harmful chironomid species from the Sečovlje Salterns based on DNA barcoding
Abstract:
Petola is the essential element in traditional salt production in Sečovlje Salterns. It is a few millimeters-thick microbial layer that enables the harvesting of high-quality, pure, and white salt. It has been observed that one of the pests damaging the petola is a non-biting midge (Chironomidae) or, more precisely, its larvae. DNA barcoding is a method that serves as a complementary or alternative approach to traditional species identification based on morphology. In this method, specific regions of DNA (DNA barcodes) that are highly conserved within a species but sufficiently variable among species are analyzed to enable taxonomic differentiation. For most animal species, the most effective barcode is the 5′-region of the gene encoding the cytochrome c oxidase subunit I (COI). In this thesis, the sex of 13 adult non-biting midges, sampled in May 2024 in the vicinity of the crystallization ponds of the Sečovlje Salterns, was determined based on distinct morphological characteristics. We extracted DNA from specimens and amplified the COI region using modified Folmer primers LCO1490' and HCO2198'. The amplification products were ligated into vectors, which were then cloned in E.coli and prepared for sequencing. Analysis of the obtained nucleotide sequences revealed that all samples belong to the genus Chironomus. For three specimens, we unambiguously identified the species Chironomus salinarius. Based on genetic distances among the sequences, we concluded that all analyzed specimens most likely belong to this species. We rejected the previous assumption that the midges occurring in large numbers in the Sečovlje Salterns during spring belong to the species Halocladius varians.

Keywords:petola, non-biting midges, Chironomidae, DNA barcoding, Chironomus salinarius

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