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Vpliv bakrovih ionov na vezavo N-acetil-D-laktozamina na lizocim
ID Bregar, Jana (Author), ID Hribar Lee, Barbara (Mentor) More about this mentor... This link opens in a new window

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Abstract
Porušena homeostaza kovinskih ionov lahko vodi do oksidativnega stresa, ki spodbuja nepravilno zvijanje in agregacijo proteinov, kar je povezano z različnimi patološkimi stanji. V sklopu diplomskega dela smo raziskali vpliv bakrovih (Cu$^{2+}$) ionov na vezavo N-acetil-D-laktozamina (LacNAc) na lizocim iz kokošjega jajčnega beljaka (HEWL). Vezavo LacNAc na HEWL in vpliv Cu$^{2+}$ ionov smo spremljali z UV-Vis in fluorescentno spektroskopijo. Vpliv Cu$^{2+}$ ionov na sekundarno strukturo in termostabilnost HEWL smo spremljali z CD-spektroskopijo in diferenčno dinamično kalorimetrijo (DSC). Mesto vezave LacNAc na HEWL smo napovedali z molekulskim sidranjem. Z analizo fluorescentnih emisijskih spektrov smo potrdili vezavo LacNAc na HEWL in da Cu$^{2+}$ ioni spremenijo interakcijo med LacNAc in HEWL. Z molekulskim sidranjem smo napovedali, da se LacNAc veže v vrzel aktivnega mesta. Iz elektrostatskega potenciala na HEWL je razvidno, da je v vrzeli aktivnega mesta področje z negativnim potencialom, ki lahko predstavlja potencialno vezavno mesto za Cu$^{2+}$ ione. Cu$^{2+}$ ioni pod preiskovanimi pogoji niso povzročili opaznih sprememb v sekundarni strukturi in niso povzročili signifikantne destabilizacije HEWL. Iz teh rezultatov smo sklepali, da Cu$^{2+}$ ioni vplivajo na vezavo LacNAc na HEWL tako, da tekmujejo za isto vezavno mesto.

Language:Slovenian
Keywords:vezava, lizocim, N-acetil-D-laktozamin, bakrovi ioni
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2025
PID:20.500.12556/RUL-171840 This link opens in a new window
COBISS.SI-ID:252460291 This link opens in a new window
Publication date in RUL:03.09.2025
Views:187
Downloads:36
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Secondary language

Language:English
Title:The influence of copper ions on the binding of N-acetyl-D-lactosamine to lysozyme
Abstract:
Disruption of metal ion homeostasis can lead to oxidative stress, which promotes protein misfolding and aggregation linked to several pathological conditions. The aim of our research was to investigate the influence of copper (Cu$^{2+}$) ions on the binding of N-acetyl-D-lactosamine (LacNAc) to hen egg white lysozyme (HEWL). UV-Vis and fluorescence spectroscopy were used to monitor the interaction between LacNAc, Cu$^{2+}$ ions and HEWL. The effect of copper ions on the secondary structure and the thermostability of HEWL were assessed using circular dichroism (CD) spectroscopy and differential scanning calorimetry (DSC), respectively. Molecular docking was used to predict the location of the binding site of LacNAc on HEWL. Fluorescence emission spectra analysis confirmed the binding of LacNAc to HEWL and indicated that Cu$^{2+}$ ions modulate the interaction between LacNAc and HEWL. Molecular docking predicted that LacNAc binds in the active site cleft of HEWL. The electrostatic potential map for HEWL showed an area with negative potential within the active site cleft, which could be a possible binding site for Cu$^{2+}$ ions. Cu$^{2+}$ ions do not cause substantial changes in the protein’s secondary structure under the conditions studied and they do not significantly destabilize HEWL. From these results, we suggest that Cu$^{2+}$ ions modulate the binding of LacNAc by competing for a common binding site.

Keywords:binding, lysozyme, N-acetyl-D-lactosamine, copper ions

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