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Presejanje in kineticne lastnosti vezave tarcnih ligandov na rekombinanten encim paraoksonaza 1
ID Žnidaršič, Neja (Author), ID Goličnik, Marko (Mentor) More about this mentor... This link opens in a new window

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Abstract
Cilj magistrskega dela je bil identificirati nove kompetitivne inhibitorje rekombinantnega encima paraoksonaza 1 (rePON1), ki bi lahko z višjo afiniteto nadomestili že znani inhibitor 2-hidroksikinolin (2HQ). PON1 je od kalcija odvisna sesalska hidrolaza, ki sodeluje v zaščiti pred oksidativnim stresom in razgradnji različnih estrov. Sprva smo z izražanjem v bakterijah E. coli ter z uporabo nikelj-afinitetne, ionsko-izmenjevalne in gelsko izključitvene kromatografije uspešno izolirali rePON1. Zatem smo izvedli spektrofotometrični presejalni test 1409 klinično odobrenih spojin iz knjižnice NMPA (angl. National Medical Products Administration) in na osnovi zmanjšanja encimske aktivnosti identificirali 25 spojin z vsaj 10 % inhibicije. Deset najbolj obetavnih inhibitorjev smo nadalje kinetično ovrednotili. Najučinkovitejša inhibitorja sta bila efavirenz (Ki = 0,93 ± 0,01 µM) in prulifloxacin (Ki = 1,39 ± 0,02 µM), ki sta izkazala 2- do 3-krat večjo afiniteto do rePON1 kot 2HQ (Ki = 2,54 ± 0,03 µM). Rezultati potrjujejo strukturno promiskuiteto aktivnega mesta PON1. Zaradi ugodnih spektroskopskih lastnosti bi bilo mogoče oba novo odkrita inhibitorja vključiti v razvoj občutljivejših luminiscentnih testov, s čimer bi prispevali k izboljšanju kvantifikacije PON1 v bioloških vzorcih.

Language:Slovenian
Keywords:paraoksonaza 1, encimska inhibicija, kompetitivni inhibitorji, encimska kinetika
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Year:2025
PID:20.500.12556/RUL-171796 This link opens in a new window
COBISS.SI-ID:247644931 This link opens in a new window
Publication date in RUL:03.09.2025
Views:196
Downloads:53
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Secondary language

Language:English
Title:Screening and kinetic characteristics of target binding ligands to recombinant enzyme paraoxonase 1
Abstract:
The aim of this master's thesis was to identify new competitive inhibitors of the recombinant enzyme paraoxonase 1 (rePON1) that could replace the known inhibitor 2-hydroxyquinoline (2HQ) with higher affinity. PON1 is a calcium-dependent mammalian hydrolase involved in protection against oxidative stress and in the hydrolysis of various esters. Initially, we successfully isolated rePON1 through expression in E. coli and purification using immobilized metal affinity, ion exchange, and size exclusion chromatography. Subsequently, we conducted a spectrophotometric screening of 1,409 clinically approved compounds from the National Medical Products Administration (NMPA) library and identified 25 compounds with at least 10% inhibition based on reduced enzymatic activity. The ten most promising inhibitors were further evaluated kinetically. The most efficient inhibitors were efavirenz (Ki = 0.93 ± 0.01 µM) and prulifloxacin (Ki = 1.39 ± 0.02 µM), both showing 2- to 3-fold higher affinity for rePON1 than 2HQ (Ki = 2.54 ± 0.03 µM). The results confirm the structural promiscuity of the PON1 active site. Due to their favorable spectroscopic properties, both novel founded inhibitors could be incorporated into the development of more sensitive luminescent assays, thereby contributing to improved quantification of PON1 in biological samples.

Keywords:paraoxonase 1, enzyme inhibition, competitive inhibitors, enzyme kinetics

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