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Lastnosti vode v bližini ravnih sten
ID Flajšar, Nejc (Author), ID Urbič, Tomaž (Mentor) More about this mentor... This link opens in a new window

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Abstract
Voda ob faznih mejah spremeni svoje obnašanje in tudi vpliv na topljence. V tem magistrskem delu sem ob modelni gladki steni preučeval spremembo gostotnih profilov, preferenčne orientacije in dielektričnost vode ter spremembe interakcij, induciranih s topilom. V ta namen sem uporabil lasten program za simulacijo molekulske dinamike ob modelni steni. S primerjavo izračunanih lastnosti vode z obstoječimi podatki sem ugotovil, da uporabljena modelna gladka stena, ustreza nekaterim realnim faznim mejam, kot so npr. diamantna površina. Pokazal sem tudi, da lahko stena močno vpliva na interakcije, inducirane s topilom. Z rezultati simulacij pokažem, kako stena vpliva na strukturo vode okoli topljencev, in to strukturo povežem s potencialnimi krivuljami interakcij. Te interakcije, ki se delijo na hidrofobne in hidrofilne, se pogosto uporabljajo kot modelna razlaga sil, ki vodijo zvijanje proteinov. Z rezultati simulacij pokažem, da je prisotnost sten pomembna pri takšni uporabi in predstavim interpretacijo rezultatov pri razlagi denaturacije proteinov.

Language:Slovenian
Keywords:fazne meje, gladka stena, hidrofobne interakcije, hidrofilne interakcije
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2025
PID:20.500.12556/RUL-171783 This link opens in a new window
COBISS.SI-ID:252620547 This link opens in a new window
Publication date in RUL:02.09.2025
Views:170
Downloads:47
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Secondary language

Language:English
Title:Properties of water near straight walls
Abstract:
Water changes its properties near phase boundaries and changes its effects on solutes. In this work I therefore studied the change in density, orientation profiles and dielectric properties of water near model flat walls; and the change in solvent-induced interactions. For this purpose, I developed a program for molecular dynamics simulation near a model wall. By comparing calculated water properties with existing data, I show that our model wall fits well with some realistic potentials, such as a diamond surface. I also show that a wall can significantly affect solvent induced interactions. With simulation results I show how a wall affects the structure of water around solutes and connect this structure with potential curves of this interaction. These interactions, separated into hydrophobic and hydrophilic, are often used as qualitative explanation of forces involved in protein folding. With our results, I show a wall potential is important to this use and present an interpretation of our results in an explanation of protein denaturation.

Keywords:phase boundary, flat wall, hydrophobic interaction, hydrophilic interaction

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