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Merjenje kinetike disociacije dolgih na novo načrtovanih obvitih vijačnic
ID Krisper, David (Author), ID Ljubetic, Ajasja (Mentor) More about this mentor... This link opens in a new window

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Abstract
Raziskovali smo dolge, de novo načrtovane obvite vijačnice osnovane na naravnem proteinu tropomiozinu. Zaradi svoje modularnosti in specifičnega povezovanja imajo velik potencial pri razvoju nanomaterialov ter v biomedicinskih aplikacijah. Širši namen naloge je prenesti princip izpodrivanja verige z oprimkom iz sveta DNA na obvite vijačnice. Osredotočili smo se na tropomiozinski par C12, D12 in njune različice, ki smo jih uspešno izrazili, izolirali in očistili. S kombinacijo metod kromatografije z ločevanjem po velikosti z večkotnim detektorjem sipanja svetlobe (SEC-MALS), cirkularnim dikroizmom (CD) in izotermično titracijsko kalorimetrijo (ITC) smo potrdili njihovo molekulsko maso, sekundarno strukturo in afiniteto vezave. Z metodo razdeljene luciferaze NanoLuc smo določili konstanto disociacije. Z metodama prenosa energije z resonanco fluorescence (FRET) in razdeljene luciferaze NanoLuc smo pokazali potencialno izpodrivanje obvitih vijačnic s pomočjo oprimka, kar potrjuje, da imajo obvite vijačnice potencial za načrtovanje dinamičnih proteinskih sistemov.

Language:Slovenian
Keywords:obvite vijačnice, proteinska kinetika, de novo načrtovanje proteinov
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Year:2025
PID:20.500.12556/RUL-170809 This link opens in a new window
COBISS.SI-ID:242876675 This link opens in a new window
Publication date in RUL:17.07.2025
Views:317
Downloads:76
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Secondary language

Language:English
Title:Measuring the dissociation kinetics of long de novo designed coiled-coils
Abstract:
We investigated long, de novo designed coiled-coils based on natural tropomyosin. Due to their modularity and specific binding, they offer great potential in the development of nanomaterials and biomedical applications. From the world of DNA nanotechnology, we wanted to transfer the principle of toehold mediated strand displacement to coiled-coils. We focused on the tropomyosin pair C12, D12 and their variants, which we successfully expressed, isolated and purified. Using a combination of size-exclusion chromatography with multi-angle light scattering (SEC-MALS), circular dichroism (CD) and isothermal titration calorimetry (ITC), we confirmed their molecular weight, secondary structure and binding affinity. Using the NanoLuc split luciferase method, we determined the dissociation constant. Using fluorescence resonance energy transfer (FRET) and split luciferase NanoLuc methods, we also demonstrated the possibility of partial toehold mediated strand displacement of coiled-coils, confirming that coiled-coils have the potential for the design of dynamic protein systems.

Keywords:coiled-coils, protein kinetics, de novo protein design

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