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In silico model homogenizacije elektroporiranega rastlinskega tkiva
ID Može, Gaj (Author), ID Mahnič-Kalamiza, Samo (Mentor) More about this mentor... This link opens in a new window, ID Šmerc, Rok (Comentor)

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Abstract
Elektroporacija je pojav, pri katerem se v celični membrani zaradi delovanja zunanjega električnega polja tvorijo pore. Te povečajo električno prevodnost in prepustnost membrane za molekule, ki v normalnih razmerah skozi membrano ne bi prehajale. Elektroporacija je že dolgo predmet raziskav, saj se jo s pridom izkorišča v različnih panogah, kot so biotehnološke raziskave, prehranska industrija ter medicina. Veliko raziskav je narejenih predvsem na živalskih (biomedicina), pa tudi na rastlinskih (prehranska industrija) celicah in tkivih. V kontekstu elektroporacije so dobro raziskane predvsem rastline kot so krompir, jabolko in korenje. Cilj magistrske naloge je razviti simulacijski model elektroporacije krompirjevega tkiva, katerega rezultati se dovolj natančno ujemajo z eksperimentalnimi podatki iz dejanskih študij. S tem želim pokazati, da je pojav elektroporacije mogoče zanesljivo simulirati s pomočjo računalniških modelov. Za gradnjo modela sem iz članka z obsežno zbirko slik pridobil informacije o velikostih celic v krompirjevem tkivu, medtem ko sem preostale potrebne parametre – kot so izhodna napetost generatorja, električna prevodnost tkiva, pragovna napetost za pojav elektroporacije in druge – črpal iz relevantne literature. Na podlagi teh podatkov sem v simulacijski model vključil celice šestih različnih velikosti, razporejene naključno, da sem se čim bolj približal dejanski strukturi in porazdelitvi celic v tkivu. Simulacija je bila izvedena v časovni domeni, vendar ne zaradi časovno odvisnega pojava, temveč kot tehnična rešitev v programu COMSOL, ki omogoča analizo pri različnih jakostih električnega polja znotraj enega samega simulacijskega cikla. Rezultati tako prikazujejo pojav elektroporacije pri naraščajočih jakostih električnega polja ter ustrezno spremembo prevodnosti posameznih celic in celotnega tkiva.

Language:Slovenian
Keywords:elektroporacija, tkivo krompirja, simulacijski model, električna prevodnost
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:FE - Faculty of Electrical Engineering
Year:2025
PID:20.500.12556/RUL-170521 This link opens in a new window
COBISS.SI-ID:242109699 This link opens in a new window
Publication date in RUL:08.07.2025
Views:269
Downloads:59
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Secondary language

Language:English
Title:In silico model of homogenisation of electroporated plant tissue
Abstract:
Electroporation is a phenomenon in which pores form in the cell membrane due to the application of an external electric field. These pores increase the membrane’s electrical conductivity and permeability to molecules that would not normally pass through under standard conditions. Electroporation has been studied extensively, as it is widely used in various fields such as biotechnology, the food industry, and medicine. A significant amount of research has been conducted on both animal (biomedical) and plant (food industry) cells and tissues. In the context of electroporation, plants such as potatoes, apples, and carrots are among the most thoroughly studied. The goal of this master’s thesis is to develop a simulation model of electroporation in potato tissue, with results that closely match experimental data from actual studies. The aim is to demonstrate that electroporation can be reliably simulated using computational models. For building the model, I obtained information on cell sizes in potato tissue from a paper containing an extensive image dataset, while the remaining necessary parameters—such as the output voltage of the pulse generator, the electrical conductivity of the tissue, the threshold voltage for electroporation, and others—were sourced from relevant literature. Based on this data, I included randomly distributed cells of six different sizes in the simulation model to closely approximate the actual structure and distribution of cells in real tissue. The simulation was conducted in the time domain—not to capture a time-dependent phenomenon, but rather as a technical workaround within the COMSOL software, which allows for analysis at varying electric field strengths within a single simulation cycle. The results thus illustrate the onset of electroporation at increasing electric field intensities, as well as the corresponding changes in conductivity of individual cells and of the tissue as a whole.

Keywords:electroporation, potato tuber, simulation model, electrical conductivity

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