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Razvoj sinteznih metod za vgradnjo nenaravnih fragmentov v polipeptidne verige
ID Barbič, Urban (Author), ID Gazvoda, Martin (Mentor) More about this mentor... This link opens in a new window

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Abstract
V okviru magistrskega dela smo se ukvarjali z razvojem metod za vgradnjo nenaravnih fragmentov, natančneje spojin razreda dikarba-closo-dodekaboranov (karboranov), v polipeptidne verige in s sintezo peptidov. Izbira karboranov temelji na njihovi potencialni uporabi v medicini, kjer lahko posnemajo karbociklična ogrodja in so zaradi visoke vsebnosti bora zanimivi za BNCT (angl. Boron Neutron Capture Therapy). Vgradnja karboranov v polipeptide je potekala na različne načine, poglaviten med njimi je temeljil na pripravi N-hidroksisukcinimid (NHS) estrov in reakcije teh z ε-aminsko skupino stranske verige aminokisline lizina (Lys). Pripravili smo dva različna NHS reagenta, ki vsebujeta karboransko zvrst in ju testirali v reakcijah biokonjugacij na modelnih peptidih, ki smo jih pripravili sami. Vgradnjo karboranov smo izvedli tudi preko aktivirane 1,7-dikarba-closo-dodekaboran-1-karboksilne kisline s sledečim spajanjem s peptidno verigo, in tudi preko priprave nenaravne aminokisline, ki je vsebovala karboransko skupino in smo jo v polipeptidno verigo uvedli z uporabo avtomatizirane SPPS (angl. Solid-phase peptide synthesis). Sočasno smo se ukvarjali z razvojem komplementarne sinteze metode za pripravo peptidov in sicer preko optimizacije priprave krajših polipeptidov z uporabo zelenih topil, nezaščitenih aminokislin in cenejših aktivatorjev.

Language:Slovenian
Keywords:dikarba-closo-dodekaboran, BNCT, polipeptidi, N-hidroksisukcinimid ester, biokonjugacija.
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2025
PID:20.500.12556/RUL-169372 This link opens in a new window
COBISS.SI-ID:237658371 This link opens in a new window
Publication date in RUL:26.05.2025
Views:468
Downloads:0
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Secondary language

Language:English
Title:Development of synthetic methods for the incorporation of non-natural fragments into polypeptide chains
Abstract:
Within this thesis, we were developing methods for incorporation of unnatural fragments, specifically compounds of the dicarba-closo-dodecaborane class (carboranes), into polypeptide chains and synthesizing peptides. The selection of carboranes was based on their potential use in medicine, where they can mimic carbocyclic frameworks and are of interest for BNCT (Boron Neutron Capture Therapy) due to their high boron content. The incorporation of carboranes into peptides was carried out in various ways. The most important among them was based on the preparation of N-hydroxysuccinimide (NHS) esters and their reaction with the ε-amino group of the lysine side chain. We prepared two different NHS reagents containing the carborane group and tested bioconjugation reactions on model peptides, which we prepared in advance. The incorporation of carboranes into peptides was also achieved via activated dicarba-closo-dodecaborane carboxylic acid with subsequent coupling, and by the preparation of a carborane-functionalized amino acid, which was introduced into the peptide using automated SPPS. In paralel, we worked on development of method for peptide synthesis through preparation of shorter polypeptides using green solvents, unprotected amino acids, and more cost-effective activators.

Keywords:dicarba-closo-dodecaboran, BNCT, polypeptide, N-hydroxysuccinimide ester, bioconjugation.

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