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ChiraKit : an online tool for the analysis of circular dichroism spectroscopy data
ID Burastero, Osvaldo (Author), ID Jones, Nykola C. (Author), ID Defelipe, Lucas A. (Author), ID Zavrtanik, Uroš (Author), ID Hadži, San (Author), ID Hoffmann, Søren Vrønning (Author), ID Garcia-Alai, Maria (Author)

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Abstract
Circular dichroism (CD) spectroscopy is an established biophysical technique to study chiral molecules. CD allows investigating conformational changes under varying experimental conditions and has been used to understand secondary structure, folding, and binding of proteins and nucleic acids. Here, we present ChiraKit, a user-friendly, online, and open-source tool to process raw CD data and perform advanced analysis. ChiraKit features include the calculation of protein secondary structure with the SELCON3 and SESCA algorithms, estimation of peptide helicity using the helix-ensemble model, the fitting of thermal/chemical unfolding or user-defined models, and the decomposition of spectra through singular value decomposition or principal component analysis. ChiraKit can be accessed at https://spc.embl-hamburg.de/.

Language:English
Keywords:spectroscopy, circular dichroism, biophysical chemistry, secondary structure, thermal unfolding, intrinsically disordered proteins, software
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Publication status:Published
Publication version:Version of Record
Year:2025
Number of pages:11 str.
Numbering:Vol. 53, iss. W1, art. gkaf350
PID:20.500.12556/RUL-169070 This link opens in a new window
UDC:577.322:004.4
ISSN on article:1362-4962
DOI:10.1093/nar/gkaf350 This link opens in a new window
COBISS.SI-ID:235365891 This link opens in a new window
Publication date in RUL:09.05.2025
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Downloads:87
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Record is a part of a journal

Title:Nucleic acids research online
Shortened title:Nucleic acids res. online
Publisher:Oxford University Press
ISSN:1362-4962
COBISS.SI-ID:2172954 This link opens in a new window

Licences

License:CC BY-NC 4.0, Creative Commons Attribution-NonCommercial 4.0 International
Link:http://creativecommons.org/licenses/by-nc/4.0/
Description:A creative commons license that bans commercial use, but the users don’t have to license their derivative works on the same terms.

Secondary language

Language:Slovenian
Keywords:spektroskopija, cirkularni dikroizem, biofizikalna kemija, sekundarna struktura proteinov, termična denaturacija, intrinzično neurejeni proteini, programska oprema

Projects

Funder:EC - European Commission
Project number:Marie Skłodowska-Curie grant agreement No. 945405

Funder:EC - European Commission
Project number:Grant agreement No. 101004806 (MOSBRI)

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P1-0201
Name:Fizikalna kemija

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J1-50026
Name:Vloga novega sekvenčnega motiva bogatega z alanini pri kondenzaciji RNA-vezavnih proteinov

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