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Vpliv modula toksin/antitoksin higBA2 iz Vibrio Cholerae na bakterijsko rast
ID Verdel, David (Author), ID Hadži, San (Mentor) More about this mentor... This link opens in a new window

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Abstract
Moduli toksin/antitoksin so genetski elementi, ki se nahajajo na plazmidih ali kromosomih številnih bakterij in arhej. Ti moduli naj bi imeli vlogo pri različnih celičnih procesih, vključno z vzdrževanjem plazmidov in obstojnostjo organizma v neugodnih pogojih. Moduli toksin/antitoksin tipa II vsebujejo zapis za protein, ki zavira celično rast (toksin) in antitoksin, ki prepreči delovanje toksina. Toksin zavira bistvene celične procese, kot so replikacija DNA, prevajanje ali sinteza celične stene. Antitoksin pa nasprotuje delovanju toksina tako, da se nanj veže in nevtralizira njegove učinke. Modul na katerega smo se osredotočili je higBA2 iz Vibrio cholerae. Pri tem modulu antitoksin vpliva na regulacijo lastnega operona z vezavo na DNA. Toksin HigB2 deluje bakteriostatsko tako, da se veže na ribosom in cepi mRNA. Antitoksin HigA2 preko neposredne interakcije s HigB2 prepreči njegovo delovanje, vezava in posledično izražanje operona pa je pogojeno z molskim razmerjem toksin/antitoksin. Pri visokih vrednostih razmerja (prebitek toksina) se antitoksin ne veže na DNA in operon se izraža, pri nizkih vrednostih (prebitek antitoksina) pa je izražanje onemogočeno. V tej magistrski nalogi smo raziskovali vpliv sistema toksin/antitoksin higBA2 iz bakterije Vibrio cholerae na bakterijsko rast. Preučili smo kako lahko regulacijo transkripcije študiramo in vivo ter kako prisotnost higBA2 modula vpliva na bakterijsko rast v prisotnosti stresnih dejavnikov ali kompetitivnega bakterijskega seva. Rezultati so pokazali, da ima sev z higBA2 boljšo sposobnost rasti v kompetitivnih pogojih, čeprav bistvenih razlik v hitrosti rasti individualnih sevov nismo zaznali. Pri mapiranju transkripcijske regulacije higBA2 preko reporterskega proteina pa smo ugotovili, da prisotnost zapisa za RBS pred reporterskim proteinom bistveno izboljša jakost signala.

Language:Slovenian
Keywords:toksin/antitoksin, higBA2, vezavno mesto za ribosom (RBS), bakterijska rast, kompetitivna rast
Work type:Master's thesis/paper
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2024
PID:20.500.12556/RUL-164457 This link opens in a new window
Publication date in RUL:25.10.2024
Views:67
Downloads:206
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Secondary language

Language:English
Title:Impact of higBA2 toxin-antitoxin module from Vibrio Cholerae on bacterial growth
Abstract:
Toxin/antitoxin modules are genetic elements located on the plasmids or chromosomes of many bacteria and archaea. These modules are thought to play a role in a variety of cellular processes, including plasmid maintenance and organismal persistence under adverse conditions. Type II toxin/antitoxin modules contain a record for a protein that inhibits cell growth (toxin) and an antitoxin that prevents the action of the toxin. The toxin inhibits essential cellular processes such as DNA replication, translation or cell wall synthesis. Antitoxin opposes the action of the toxin by binding to it and neutralizing its effects. The module we focused on is higBA2 from Vibrio cholerae. In this module, the antitoxin affects the regulation of its own operon by binding to DNA. The HigB2 toxin acts bacteriostatically by binding to the ribosome and cleaving mRNA. HigA2 antitoxin prevents its action through direct interaction with HigB2, and the binding and subsequent expression of the operon is conditioned by the toxin/antitoxin molar ratio. At high values of the ratio (toxin excess) the antitoxin does not bind to the DNA and the operon is expressed, but at low values (antitoxin excess) expression is disabled. In this master's thesis, we investigated the influence of the higBA2 toxin/antitoxin system from the bacterium Vibrio cholerae on bacterial growth. We examined how the regulation of transcription can be studied in vivo, and how the presence of the higBA2 module affects bacterial growth in the presence of stress factors or a competitive bacterial strain. The results showed that the strain with higBA2 has a better ability to grow in competitive conditions, although we did not detect significant differences in the growth rate of individual strains. When mapping the transcriptional regulation of higBA2 via the reporter protein, we found that the presence of RBS in front of the reporter protein significantly improves the signal strength.

Keywords:toxin/antitoxin, higBA2, ribosome binding site (RBS), bacterial growth, competitive growth

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