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Optimizacija nivojev izražanja peptida SpyTag na nitastem bakteriofagnem vektorju tipa 88
ID Papa, Sara (Author), ID Bratkovič, Tomaž (Mentor) More about this mentor... This link opens in a new window

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Abstract
Uporaba nitastih bakteriofagov za razvoj rekombinantnih modularnih cepiv velja za obetavno platformo zaradi njihovih ugodnih lastnosti, kot so enostavno genetsko spreminjanje, visoka specifičnost (s tem povezana tudi varnost), imunogenost in visoka stabilnost. Do sedaj so z raziskavami in vitro in vivo uspeli dokazati proti-rakave, proti-virusne, proti-parazitne in proti-bakterijske učinke bakteriofagnih cepiv s predstavljenimi antigenskimi peptidi. Vendar pa kot pomanjkljivost navajajo težave pri pravilnem zvijanju proteinskih antigenov v fuziji s strukturnimi bakteriofagnimi proteini, neučinkovitem prenosu v periplazmo in steričnem oviranju sestavljanja bakteriofagne kapside, kar pa vodi v nezadosten nivo predstavitve antigena na kapsidi. Alternativno bi lahko na bakteriofagu predstavili razmeroma kratke peptide iz t.i. razcepljenih proteinov in te uporabili za vezavo proteinskih antigenov. Primer razcepljenega proteina je sistem SpyTag:SpyCatcher, v katerem se peptidna in proteinska komponenta po specifični vezavi spontano povežeta s kovalentno (izopeptidno) vezjo. V okviru magistrske naloge smo pripravili štiri genske konstrukte za fuzijski protein SpyTag-kapsidni protein pVIII, ki smo jih vstavili v vektor f88KE (bakteriofagni vektor tipa 88, ki nosi dve kopiji gena za glavni kapsidni protein pVIII – divjega tipa in rekombinantno). Konstrukti so se razlikovali v kombinaciji signalnega peptida (bodisi za kotranslacijski ali za posttranslacijski transport v periplazmo bakterije Escherichia coli) in različici peptida SpyTag (SpyTag002_T112H ali SpyTag003) z nekoliko drugačnimi fizikalno-kemijskimi značilnostmi. V petem genskem konstruktu smo v kopijo gena divjega tipa za protein pVIII vnesli redke kodone za levcin s predpostavko, da bodo ti znižali izražanje pVIII divjega tipa in se bo posledično v kapsido vgradilo več kopij rekombinantnega fuzijskega proteina pVIII (v enem od pripravljenih bakteriofagnih vektorjev smo združili takšna genska konstrukta). S testoma ELISA in prenosom western smo primerjalno ovrednotili nivoje izražanja predstavljenih peptidov na bakteriofagih. Ugotovili smo, da redki kodoni za levcin nimajo bistvenega vpliva na znižanje izražanja pVIII divjega tipa oz. da kombinacija genskih konstruktov ne izboljša predstavitve rekombinantnega proteina SpyTag-pVIII na kapsidi nitastega bakteriofaga. Smo pa zaznali občutne razlike v nivojih predstavitve peptidov SpyTag v odvisnosti od uporabljenega signalnega peptida in pozitivnega naboja različice SpyTag: najboljša je bila kombinacija signalnega peptida za kotranslacijski prenos v periplazmo in peptida SpyTag002_T112H z nekoliko nižjim pozitivnim nabojem.

Language:Slovenian
Keywords:nitasti bakteriofag, predstavitev na bakteriofagu, signalni peptidi, SpyTag, vektor tipa 88
Work type:Master's thesis/paper
Organization:FFA - Faculty of Pharmacy
Year:2024
PID:20.500.12556/RUL-161399 This link opens in a new window
Publication date in RUL:11.09.2024
Views:153
Downloads:34
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Secondary language

Language:English
Title:Optimization of the SpyTag peptide display valency on type 88 filamentous bacteriophage vector
Abstract:
The use of filamentous bacteriophages for the development of recombinant modular vaccines is considered a promising platform due to their favorable characteristics, such as easy genetic modification, high specificity (and thus safety), immunogenicity, and high stability. So far, in vitro/vivo research has demonstrated positive anti-cancer, anti-viral, anti-parasitic, and anti-bacterial effects of antigenic peptide display bacteriophage vaccines. However, the improper folding of the presented antigenic proteins, their ineffective transfer to the periplasm, and steric hindering of capsid assembly which all lead to an insufficient display level severly hamper the development of phage-based vaccines. Alternatively, short peptides from split proteins for protein antigen payload tethering might be well-suited for phage display. SpyTag:SpyCatcher is an example of split protein system in which the two components form a covalent (isopeptide) bond upon selective binding. In the scope of the master's thesis, we prepared four genetic constructs for the SpyTag-capsid protein 8 fusions, which were inserted into the vector f88KE (a type 88 phage display vector harboring 2 copies of of the major capsid protein pVIII, a wild-type and a recombinant one). The constructs differed in combinations of the signal peptide (directing the periplasmic transfer either co- or posttranslationally) and the version of the SpyTag peptide (SpyTag002_T112H or SpyTag003) having slightly different physico-chemical properties. In the fifth genetic construct, we introduced rare codons for leucine in the wild-type copy of the gene encoding protein pVIII. We speculated that this would lead to reduced expression of wild-type pVIII and consequently more recombinant fusion protein pVIII copies would be integrated in the capsid (in one of the designed phage vectors such constructs were combined). Using ELISA and western blot assays, we comparatively evaluated the display levels of peptides. We found that rare leucine codons do not significantly reduce the expression of wild-type pVIII, nor does the combination of genetic constructs improve the presentation of the SpyTag-pVIII recombinant protein on the filamentous bacteriophage capsid. However, we observed significant differences in display levels of SpyTag peptides depending on the type of signal peptide and SpyTag variant's positive charge. The best combinantion included the signal peptide directing proteins to periplasm co-translationally and the SpyTag002_T112H peptide variant having a slightly lower positive charge.

Keywords:filamentous bacteriophage, phage display, signal peptides, SpyTag, type 88 vector

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