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Priprava rekombinantnih proteinov nudolizina A in B v bakteriji Escherichia coli in njuna interakcija z umetnimi lipidnimi membranami
ID Perko, Žan (Author), ID Skočaj, Matej (Mentor) More about this mentor... This link opens in a new window

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Abstract
Z uporabo bioinformatskih analiz smo ugotovili prisotnost genskega zapisa za egerolizin in protein z domeno, ki napade membrano/perforin (MACPF) pri bazidiomiceti vijoličasta kolesnica (Lepista nuda). Egerolizin smo poimenovali nudolizin A (NudA), protein z domeno MACPF pa nudolizin B (NudB). V okviru magistrske naloge smo v bakteriji Escherichia coli izrazili in pridobili rekombinantna proteina NudA in NudB. Vezavo NudA na lipidne membrane smo preverjali s sedimentacijskim testom. Ugotovili smo, da se NudA veže na lipidno mešanico sestavljeno iz ceramid fosfoetanolamina in holesterola ter na celokupni lipidni ekstrakt iz žuželčje celične linije Sf9. Vezava NudA na lipidno mešanico, sestavljeno iz sfingomielina in holesterola pa je bila po drugi strani zelo šibka. V nadaljevanju smo preverjali ali mešanica proteinov NudA in NudB tvori citolitične porotvorne komplekse. S testom hemolize na govejih eritrocitih smo ugotovili, da je proteinska mešanica NudA/NudB hemolitična ter da je hemoliza bolj izrazita v kislih razmerah (pH 6,0). Citolitično aktivnost proteinske mešanice NudA/NudB smo na koncu testirali še na žuželčji celični liniji Sf9 in vitro, kjer smo dokazali, da mešanica NudA/NudB deluje citolitično.

Language:Slovenian
Keywords:rekombinantni proteini, egerolizini, nudolizin A, nudolizin B, Lepista nuda
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Publisher:[Ž. Perko]
Year:2024
PID:20.500.12556/RUL-158529 This link opens in a new window
UDC:577.21:577.352
COBISS.SI-ID:199104259 This link opens in a new window
Publication date in RUL:15.06.2024
Views:53
Downloads:18
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Secondary language

Language:English
Title:Production of recombinant proteins nudolysin A and B from Escherichia coli and their interaction with model lipid membranes
Abstract:
Using bioinformatic analyses, we identified the presence of the gene coding for aegerolysin and for a membrane attack complex/perforin (MACPF)-domain protein in the basidiomycete Lepista nuda, commonly known as the wood blewit. We named the aegerolysin nudolysin A (NudA) and the MACPF-domain protein nudolysin B (NudB). For our master's thesis, we expressed and obtained recombinant NudA and NudB proteins in bacteria Escherichia coli. We investigated the binding of NudA to membranes with specific lipid compositions, using the sedimentation test. We found that NudA binds to the ceramide phosphoethanolamine/cholesterol lipid mixtures and to the total lipid extract from the insect cell line Sf9. Furthermore, we also detected weak binding of NudA to sphingomyelin/cholesterol lipid mixture. Subsequently, we examined whether the combination of NudA and NudB forms cytolytic pore-forming complexes. Initially, we used a hemolysis test on bovine erythrocytes and found that the protein mixture NudA/NudB was hemolytic at pH 7.4 and that hemolytic activity is higher in acidic conditions (pH 6.0). Finally, we tested the cytolytic activity of the protein mixture NudA/NudB on the insect cell line Sf9 in vitro, where we found that the protein mixture exhibits cytolytic effects on these cells.

Keywords:recombinant proteins, aegerolysins, nudolysin A, nudolysin B, Lepista nuda

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