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Joint identification and application of microsatellite markers in genetic diversity study of closely related species Teucrium montanum, T. capitatum and their natural hybrid
ID Varga, Filip (Author), ID Liber, Zlatko (Author), ID Turudić, Ante (Author), ID Jakše, Jernej (Author), ID Juzbašić, Lea (Author), ID Jeran, Nina (Author), ID Grdiša, Martina (Author), ID Zbiljić, Miloš (Author), ID Šatović, Zlatko (Author)

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Abstract
Teucrium montanum L. and T. capitatum L. are two plant species with overlapping distribution in the Balkan Peninsula, especially in Croatia, where several occurrences of their putative hybrid species T. × rohlenae have been recorded. Next-generation sequencing of both species and de novo assembly was carried out resulting in 120 contigs for T. montanum and 1685 contigs for T. capitatum assembled. The Dig-up primers pipeline was used for SSR mining of both assemblies, applying different criteria that resulted in 112 SSR candidates for testing. A subset of 41 SSRs was selected and after two rounds of testing, twelve SSRs were developed and characterized. A total of 232 alleles were detected with 5 to 29 alleles per locus, based on the test sample. The genetic diversity analysis of three Teucrium taxa from a single location revealed a higher level of diversity in T. montanum than in T. capitatum with intermediate values for the hybrid species. The NeighborNet diagram and genetic structure analysis grouped the taxa into two separate clusters, the first of which consisted exclusively of T. montanum, while the other was composed of intermixed T. capitatum and T. × rohlenae individuals. The availability of SSR markers for two Teucrium taxa will allow in-depth analysis of genetic diversity and structure, as well as molecular identification of their putative hybrids in the future.

Language:English
Keywords:Teucrium montanum, Teucrim capitatum, Teucrim x rohlenae, genomic SSRs, Lamiaceae
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:BF - Biotechnical Faculty
Publication status:Published
Publication version:Version of Record
Year:2024
Number of pages:12 str.
Numbering:Vol. 16, iss. 4, art. 206
PID:20.500.12556/RUL-156395 This link opens in a new window
UDC:577.2
ISSN on article:1424-2818
DOI:10.3390/d16040206 This link opens in a new window
COBISS.SI-ID:196379395 This link opens in a new window
Publication date in RUL:23.05.2024
Views:83
Downloads:20
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Record is a part of a journal

Title:Diversity
Shortened title:Diversity
Publisher:MDPI
ISSN:1424-2818
COBISS.SI-ID:517523737 This link opens in a new window

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

Language:Slovenian
Keywords:molekularna genetika, mikrosateliti, molekularni markerji, bioinformatika, identifikacija, Teucrium

Projects

Funder:HRZZ - Croatian Science Foundation
Project number:PK.1.1.02.0005
Name:Research and Development of Plant Genetic Resources for Sustainable Agriculture

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