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Uporaba bioloških in računalniških orodij za načrtovanje, testiranje in sintezo novih zaviralcev β-N-acetilglukozaminil transferaze
ID Balsollier, Cyril (Author), ID Anderluh, Marko (Mentor) More about this mentor... This link opens in a new window, ID Pieters, Roland J. (Comentor)

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Abstract
O-GlcNAcilacija je posttranslacijska modifikacija, ki se v celici pojavlja na serinskih in treoninskih ostankih beljakovin. Te aminokisline se modificirajo na svoji hidroksilni funkciji s priključitvijo ß-N-acetilglukozaminskega dela. To uravnavata dva encima O-GlcNAc transferaza (OGT), ki dodaja GlcNAc moeity na protein, in O-GlcNAcase (OGA). O-GlcNAcylation je vključen v številne biološke procese zaradi velike količine spremenjenih beljakovin in njegova disregulacija je bila označena kot pomemben korak pri degenerativnih boleznih, kot so rak, diabetes... Ker je OGT ključni del procesa O-GlcNAcylation, je potencialna terapevtska tarča, njegova inhibicija pa bo morda omogočila nove načine zdravljenja degenerativnih bolezni. V tej študiji raziskujemo nov način odkrivanja in ocenjevanja novih zaviralcev OGT. Po uvedbi testa za testiranje ligandov smo se ukvarjali z različnimi vidiki za izboljšanje obstoječih ali odkrivanje novih inhibitorjev OGT. Z uporabo računalniških orodij, kot je preskok med ogrodji, smo ugotovili, da je za posnemanje interakcije uridina z OGT potreben šestčleni obroč. V zadnjem poglavju poročamo o odkritju dveh novih družin inhibitorjev OGT z uporabo novega orodja za presejanje: Knjižnica kodiranja DNK. Sinteza majhnih knjižnic teh družin skupaj z našim biološkim testom in molekularnim modeliranjem je pokazala, da se ti dve novi družini vežeta na OGT po drugačnem mehanizmu kot dosedanji inhibitorji.

Language:English
Keywords:OGT, O-GlcNAcylation, medicinska kemija, računalniška kemija, biološki preskusi, biokemija, organska kemija
Work type:Doctoral dissertation
Organization:FFA - Faculty of Pharmacy
Year:2024
PID:20.500.12556/RUL-155602 This link opens in a new window
Publication date in RUL:08.04.2024
Views:261
Downloads:52
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Secondary language

Language:Slovenian
Title:The use of biological and computational tools to screen, assess and synthesize new potent inhibitors of β-N-acetylglucosaminyl transferase
Abstract:
O-GlcNAcylation is a post-translational modification occurring inside the cell on Serine and threonine residues of proteins. These amino acids are modified on their hydroxyl function through the attachment of a β-N-acetylglucosamine moiety. It is regulated by two enzymes O-GlcNAc Transferase (OGT) that adds the GlcNAc Moeity on the protein and O-GlcNAcase (OGA). O-GlcNAcylation is involved in multiple biological processes due to the large amount of protein modified and its dysregulation has been flagged as an important step in degeneratve diseases such as cancer, diabetes… As a key part of the O-GlcNAcylation process, OGT is a potential therapeutic target and its inhibition will possibly enable new treatments for degenerative diseases. In this study, we are investigating now way to discover and assess new OGT inhibitors. After implementing an assay to test ligands, we worked on different angles to improve existing or discover new OGT inhibitors. The use of computational tools like scaffold hopping allowed us to point that 6 member ring was needed to mimic uridine interaction with OGT. In our last chapter we report the discovery of two new families of OGT inhibitors using a new screening tool: DNA encode library. The synthesis of small libraries of these family coupled with our bioassay and molecular modeling showed that these two new families are binding to OGT through a different mechanism than the reported inhibitors.

Keywords:OGT, O-GlcNAcylation, medicinal chemistry, computational chemistry, bioassays, biochemistry, organic chemistry

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