Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine

Kočar, Eva (author), Lenarčič, Tea (author), Hodnik, Vesna (author), Panevska, Anastasija (author), Huang, Yunjie (author), Bajc, Gregor (author), Kostanjšek, Rok (author), Naren, Anjaparavanda P. (author), Maček, Peter (author), Anderluh, Gregor (author), Sepčić, Kristina (author), Podobnik, Marjetka (author), Butala, Matej (author)

Aegerolysins are proteins produced by bacteria, fungi, plants and protozoa. The most studied fungal aegerolysins share a common property of interacting with membranes enriched with cholesterol in combination with either sphingomyelin or ceramide phosphorylethanolamine (CPE), major sphingolipids in the cell membranes of vertebrates and invertebrates, respectively. However, genome analyses show a particularly high frequency of aegerolysin genes in bacteria, including the pathogenic genera Pseudomonas and Vibrio; these are human pathogens of high clinical relevance and can thrive in a variety of other species. The knowledge on bacterial aegerolysin-lipid interactions is scarce. We show that Pseudomonas aeruginosa aegerolysin RahU interacts with CPE, but not with sphingomyelin-enriched artificial membranes, and that RahU interacts with the insect cell line producing CPE. We report crystal structures of RahU alone and in complex with tris(hydroxymethyl)aminomethane (Tris), which, like the phosphorylethanolamine head group of CPE, contains a primary amine. The RahU structures reveal that the two loops proximal to the amino terminus form a cavity that accommodates Tris, and that the flexibility of these two loops is important for this interaction. We show that Tris interferes with CPE-enriched membranes for binding to RahU, implying on the importance of the ligand cavity between the loops and its proximity in RahU membrane interaction. We further support this by studying the interaction of single amino acid substitution mutants of RahU with the CPE-enriched membranes. Our results thus represent a starting point for a better understanding of the role of P. aeruginosa RahU, and possibly other bacterial aegerolysins, in bacterial interactions with other organisms.

• Language: English
• Keywords: aegerolysins, crystal structure of RahU, ceramide phosphorylethanolamine, biochemistry, lipids, membrane lipids, membrane proteins, microbiology, proteins, sphingolipids, structural biology, X-ray crystallography
• Work type: Article
• Typology: 1.01 - Original Scientific Article
• Organization: BF - Biotechnical Faculty; MF - Faculty of Medicine
• Publication status: Published
• Publication version: Version of Record
• Year: 2021
• Number of pages: 12 str.
• Numbering: Vol. 11, art. 6572
• PID: 20.500.12556/RUL-144800
• UDC: 577
• ISSN on article: 2045-2322
• DOI: 10.1038/s41598-021-85956-2
• COBISS.SI-ID: 56737283
• Publication date in RUL: 13.03.2023

KOČAR, Eva, LENARČIČ, Tea, HODNIK, Vesna, PANEVSKA, Anastasija, HUANG, Yunjie, BAJC, Gregor, KOSTANJŠEK, Rok, NAREN, Anjaparavanda P., MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina, PODOBNIK, Marjetka and BUTALA, Matej, 2021, Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine. Scientific reports [online]. 2021. Vol. 11, no. 6572. [Accessed 26 April 2025]. DOI 10.1038/s41598-021-85956-2. Retrieved from: https://repozitorij.uni-lj.si/IzpisGradiva.php?lang=eng&id=144800

Record is a part of a journal

• Title: Scientific reports
• Shortened title: Sci. rep.
• Publisher: Springer Nature
• ISSN: 2045-2322
• COBISS.SI-ID: 18727432

Licences

• License: CC BY 4.0, Creative Commons Attribution 4.0 International
• Link: http://creativecommons.org/licenses/by/4.0/
• Description: This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

• Language: Slovenian
• Keywords: aegerolizini, kristalna struktura RahU, ceramid fosforiletanolamin