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Production and structural characterization of human Gla-rich Protein, an inhibitor of vascular calcification
ID Janakievski, Nikola (Author), ID Gaber, Aljaž (Mentor) More about this mentor... This link opens in a new window, ID dos Anjos López de Macedo, Maria (Comentor)

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Abstract
Gla-rich protein (GRP) is a novel protein connected to multiple pathological disorders plaguing humanity in modern times, including chronic kidney disease, atherosclerosis, osteoarthritis, and cancer. It gets its name from the high number of γ-carboxylated glutamate residues, most of any known protein, this enables it to have a very high affinity for calcium ions, making it a potential inhibitor of ectopic calcification in soft tissue. Except for the fact that this protein contains intrinsically disordered domains, not much else is known about the structure of GRP. NMR spectroscopy is the perfect structure determination technique to tackle this problem, specializing in the structural determination of small proteins and more recently for intrinsically disordered proteins. We expressed the human GRP variant in transformed E. coli cells and labelled it with isotopes 13C and 15N. After purification, we prepared samples for liquid-state NMR spectroscopy and explored the most practical NMR experiments for structure determination. To conclude, we found the optimal experimental conditions for NMR sample preparation of human GRP allowing for structural studies to be performed. We tested out different 15N and 13C direct detection experiments at different acquisition temperatures. Our preliminary data is promising and with the acquisition of other types of multidimensional NMR spectra, and after resonance assignment, structural information can be obtained for human GRP structural features elucidation.

Language:English
Keywords:NMR, ectopic calcification, human GRP, expression, IDPs
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2022
PID:20.500.12556/RUL-143282 This link opens in a new window
COBISS.SI-ID:138709763 This link opens in a new window
Publication date in RUL:12.12.2022
Views:828
Downloads:49
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Secondary language

Language:Slovenian
Title:Priprava in strukturna karakterizacija inhibitorja žilne kalcinacije, človeškega s karboksiglutaminsko kislino bogatega proteina (GRP)
Abstract:
Gla-rich protein (GRP) is a novel protein connected to multiple pathological disorders plaguing humanity in modern times, including chronic kidney disease, atherosclerosis, osteoarthritis, and cancer. It gets its name from the high number of γ-carboxylated glutamate residues, most of any known protein, this enables it to have a very high affinity for calcium ions, making it a potential inhibitor of ectopic calcification in soft tissue. Except for the fact that this protein contains intrinsically disordered domains, not much else is known about the structure of GRP. NMR spectroscopy is the perfect structure determination technique to tackle this problem, specializing in the structural determination of small proteins and more recently for intrinsically disordered proteins. We expressed the human GRP variant in transformed E. coli cells and labelled it with isotopes 13C and 15N. After purification, we prepared samples for liquid-state NMR spectroscopy and explored the most practical NMR experiments for structure determination. To conclude, we found the optimal experimental conditions for NMR sample preparation of human GRP allowing for structural studies to be performed. We tested out different 15N and 13C direct detection experiments at different acquisition temperatures. Our preliminary data is promising and with the acquisition of other types of multidimensional NMR spectra, and after resonance assignment, structural information can be obtained for human GRP structural features elucidation.

Keywords:NMR, ektopična kalcifikacija, človeški GRP, ekspresija, IDP

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