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Izolacija amiloidnega proteina TasA bakterije Bacillus subtilis
ID Sušec, Ana (Author), ID Dogša, Iztok (Mentor) More about this mentor... This link opens in a new window

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Abstract
V magistrskem delu smo optimizirali postopek izolacijo funkcionalnega amiloidnega proteina TasA, ki je pomemben gradnik biofilma bakterije Bacillus subtilis. Protein smo izolirali iz celic rekombinantnega seva Escherichia coli, ki z uporabo induktorja lac operona producira rekombinanto obliko TasA. Protein TasA je lahko v monomerni ali fibrilarni obliki, pri čemer velja, da ima fibrilarna oblika ključno vlogo pri nastanku biofilma. TasA omogoča adhezijo celic na površino, ustvarja medcelične povezave in daje hkrati biofilmu mehansko stabilnost. Optimizacija izolacijskega postopka je potekala na osnovi spreminjanja komponent gojišča in induktorja na način, ki je omogočal pridobitev čim večje gostote celic v stresani kulturi in s tem tudi večje mase tarčnega proteina. Ugotovili smo, da je bila izolacija najbolj učinkovita v primeru gojenja celic v optimiziranem indukcijskem gojišču, ki vsebuje MgSO4, in ob uporabi induktorja izopropil beta-D-1-tiogalaktopiranozid Spremljali smo tudi spremembe v celični gostoti v odvisnosti od aeracije celične kulture in deležu inokuluma. Za najboljši način gojenja se je izkazalo stresanje 200 mL kulture v 500 mL erlenmajerici z utori in dodanim 1 % inokulumom. V naslednjem koraku smo morali suspenzijo E. coli sonicirati, saj je rekombinantni TasA znotrajcelični protein. Najustreznejši način izvedbe sonikacije za biomaso iz 1 L bakterijske kulture je trajal 40 min s 30 sekundnimi intervali in s 15 mikronsko amplitudo moči sonikacije. Želeli smo tudi pridobiti protein s čim manj prisotnih nečistoč, zato smo optimizirali čiščenje rekombinantnega proteina z uporabo GST kroglic, TEV proteaze in Ni-NTA kroglic. Pri interpretaciji z UV-VIS spektrofotometrom izmerjene koncentracije izoliranega proteina smo si pomagali z SDS-PAGE elektroforezo, s katero smo lahko potrdili identiteto vzorca, torej prisotnost očiščenega proteina TasA.

Language:Slovenian
Keywords:biofilm, amiloidni protein, protein TasA, izolacija rekombinantega proteina, detekcija proteinov
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Place of publishing:Ljubljana
Publisher:[A. Sušec]
Year:2022
PID:20.500.12556/RUL-141539 This link opens in a new window
UDC:579.22/.26:579.852.11
COBISS.SI-ID:123983363 This link opens in a new window
Publication date in RUL:01.10.2022
Views:330
Downloads:46
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Secondary language

Language:English
Title:Isolation of amyloid protein TasA of bacterium Bacillus subtilis
Abstract:
In this master’s thesis we optimized isolation process of functional amiloid TasA protein, a major component of the Bacillus subtilis biofilm. Protein was isolated from Escherichia coli cells, which produce recombinant TasA using inductor of lac operon. TasA protein is produced as monomer or fibril. Fibril is the structure important for biofilm formation. TasA enables adhesion of cells to the surface and to themselves. Protein also contributes to mechanical stability of biofilm. During optimization of protein isolation, we cultured cells in different culture media with using different inductors of lac operon, which contributes to culture with higher cell density and simultaneously to higher protein production. Isolation was more effective using optimized induction culture medium, which contains MgSO4 and adding inductor isopropyl β- d-1-thiogalactopyranoside. Important role in cell growth has aeration of culture and proportion of inoculum. The best cultivation method was shaking 200 mL of culture in 500 mL Erlenmayer flask with baffles and 1 % inoculum. We also optimized sonication of E. coli suspension, considering produced recombinant TasA is an intracellular protein. Sonication for 1 L of culture was performed in 40 minutes using 30 seconds long sonication intervals and 15 micron amplitude of sonication strength. To gain purified TasA, we also optimized the process of protein purification using GST beads, TEV protease and Ni-NTA agarose beads. We determined the concentration of isolated protein using different analytical methods, UV-VIS spectrophotometry and SDS-PAGE electrophoresis. SDS-PAGE electrophoresis also enabled determining protein size and therefore we defined that isolated protein is a pure TasA protein.

Keywords:biofilm, amiloid protein, TasA protein, recombinant protein isolation, protein detection

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