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Izolacija zunajceličnih polimernih snovi in sestavljanje sintetičnega biofilma pri bakteriji Bacillus subtilis
ID Volk, Marko (Author), ID Dogša, Iztok (Mentor) More about this mentor... This link opens in a new window

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Abstract
Bakterija Bacillus subtilis lahko s pomočjo tvorbe biofilma preživi različne neugodne razmere. To omogoča produkcija zunajceličnih polimernih snovi (EPS), ki povezujejo celice v biofilmu. Glavne komponente EPS bakterije B. subtilis so polisaharid EpsA-O, protein TasA in zunajcelična DNA. Z gojenjem za EpsA-O visokoproduktivne mutante seva B. subtilis NCIB 3610, rekombinantnega seva Escherichia coli BL21, ki prekomerno izdeluje TasA in divjega tipa B. subtilis NCIB 3610 za izolacijo DNA, smo pridobili vse glavne komponente EPS za izdelavo sintetičnega biofilma. S pomočjo testa nastanka plavajočih biofilmov (pelikula) pri različnih EPS-mutantah B. subtilis smo ugotovili, da so izolirane in očiščene komponente EPS ohranile biološko aktivnost. Z analizo sestave nativnih biofilmov smo ugotovili, da največji delež EPS predstavlja EpsA-O, nato TasA in najmanj DNA. Sledili so reološki testi sintetičnih biofilmov, kjer smo ugotovili, da k mehanskim lastnostim biofilma največ prispeva interakcija med EpsA-O in TasA. S sintetičnim biofilmom z vsemi komponentami smo dosegli enake viskoelastične vrednosti kot pri nativnem homogeniziranem biofilmu, vendar za faktor dva manjše vrednosti od nativnega biofilma. V skladu s tem so mikroskopske slike pokazale večjo podobnost sintetičnega biofilma s homogeniziranim kot z nehomogeniziranim nativnim biofilmom.

Language:Slovenian
Keywords:Bacillus subtilis, zunajcelične polimerne snovi, EPS, polisaharid EpsA-O, protein TasA, sintetični biofilm, reološke lastnosti
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Place of publishing:Ljubljana
Publisher:[M. Volk]
Year:2022
PID:20.500.12556/RUL-140033 This link opens in a new window
UDC:579.24/.26:579.853.11:577.35
COBISS.SI-ID:120936707 This link opens in a new window
Publication date in RUL:10.09.2022
Views:383
Downloads:0
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Secondary language

Language:English
Title:Isolation of exopolymeric substances and assembly of synthetic biofilm in Bacillus subtilis
Abstract:
The bacterium Bactillus subtilis can survive various unfavorable conditions by forming a biofilm. This is enabled by production of extracellular polymeric substances (EPS), which connect the cells in the biofilm. Major B. subtilis components are polysaccharide EpsA-O, protein TasA and extracellular DNA. By growing recombinant strain of B. subtilis NCIB 3610 strain that is highly productive in EpsA-O, recombinant strain of Escherichia coli that overproduces TasA and wild type B. subtilis NCIB 3610 for DNA isolation, we obtained all the major EPS components for synthetic biofilm assembly. With the floating biofilm (pellicle) formation test using different EPS defective B. subtilis mutants, we found that our EPS isolates retained biological activity. By analyzing the composition of native biofilms we found that the largest proportion of EPS is represented by EpsA-O, then TasA and the least by DNA. During the rheological test of synthetic biofilms we found that interaction between EpsA-O and TasA contributes the most to the biofilm mechanical properties. With synthetic biofilm with all EPS components we achieved same visco-elastic values as the native homogenized biofilm but by a factor of 2 lower values than the native biofilm. Congruently, the microscopic examination showed a greater similarity of the synthetic biofilm to the homogenized than to non-homogenized native biofilm.

Keywords:Bacillus subtilis, exopolymeric substances, EPS, polysaccharide EpsA-O, protein TasA, synthetic biofilm, rheological properties

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