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RhythmCount : a Python package to analyse the rhythmicity in count data
ID Velikajne, Nina (Author), ID Moškon, Miha (Author)

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Abstract
Analysis of rhythmicity in count data has become an important aspect in different fields from science and engineering to economy and process planning. Several methods have recently been implemented to investigate the rhythmicity of continuous data. However, in most cases, these need to be manually adapted to work with count data as well. Namely, non-negative integer data that are usually obtained by counting of specific events. Herein, we describe the implementation of RhythmCount, an open-source Python module specifically devoted to rhythmicity analysis of count data. RhythmCount combines the cosinor regression model with different count data models. The proposed implementation allows automatic identification of the most suitable model for a given dataset, assessment of different measures and parameters of the rhythmicity of the dataset, and production of publication-ready figures that can be used for a straightforward interpretation of the obtained results. We demonstrate an application of the proposed module in the analysis and comparison of the daily traffic trends during the COVID-19 epidemic with the daily traffic trends in normal (non-epidemic) conditions. RhythmCount is available at https://github.com/ninavelikajne/RhythmCount under the MIT license. The implementation reported in this paper corresponds to the software release v1.1.

Language:English
Keywords:rhythmometry, rhythmicity analysis, count data, cosinor regression, COVID-19
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:FRI - Faculty of Computer and Information Science
Publication status:Published
Publication version:Version of Record
Year:2022
Number of pages:9 str.
Numbering:Vol. 63, art. 101758
PID:20.500.12556/RUL-139691 This link opens in a new window
UDC:004:57.034
ISSN on article:1877-7503
DOI:10.1016/j.jocs.2022.101758 This link opens in a new window
COBISS.SI-ID:114159363 This link opens in a new window
Publication date in RUL:06.09.2022
Views:979
Downloads:149
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Record is a part of a journal

Title:Journal of computational science
Publisher:Elsevier
ISSN:1877-7503
COBISS.SI-ID:519422233 This link opens in a new window

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

Language:Slovenian
Keywords:ritmometrija, analiza ritmičnosti, števni podatki, regresija cosinor, COVID-19

Projects

Funder:ARRS - Slovenian Research Agency
Project number:P2-0359
Name:Vseprisotno računalništvo

Funder:ARRS - Slovenian Research Agency
Project number:J1-9176
Name:HolesteROR pri presnovnih boleznih jeter

Funder:ARRS - Slovenian Research Agency
Project number:J5-1798
Name:Sistem integracije podatkov za vrednotenje trajnostne učinkovitosti slovenskih sosesk in naselij

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