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Karakterizacija efektorskega proteina Vna7.443 iz glive Verticillium nonalfalfae
ID Dretnik, Klemen (Author), ID Berne, Sabina (Mentor) More about this mentor... This link opens in a new window, ID Volk, Helena (Comentor)

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Abstract
Odkrivanje funkcije kandidatnih sekretornih efektorskih proteinov (CSEPs) je ključno za razumevanje interakcije med fitopatogenimi organizmi in rastlinskimi gostitelji. Hemibiotrofna fitopatogena gliva vaskularnega venenja Verticillium nonalfalfae, ki primarno okužuje hmelj (Humulus lupulus L.) sintetizira štiri opisane apoplastne efektorske proteine: VnaPRX1.1277 (peroksidaza razreda II), VnaSSP4.2, VnaUn.279 in VnaChtBP (hitin vezavni protein), znanih citoplazemskih efektorskih proteinov pa nima. Cilj magistrske naloge je bil karakterizacija kandidatnega sekretornega efektorskega proteina Vna7.443, izbranega na osnovi predhodnih študij. Proteinu Vna7.443 smo z bioinformacijskimi pristopi predvidili homologne proteine, potencialne tarčne celične procese in osnovne opisne parametre. Subcelično lokalizacijo fuzijskih proteinov Vna7.443 z mRFP (monomerni rdeči fluorescenčni protein) označbo na C- in N-terminalnem koncu smo izvedli s konfokalno mikroskopijo na listnih izsečkih Nicotiana benthamiana, ki smo jih posredno transformirali z Agrobacterium tumefaciens. Ugotovili smo, da: 1) je protein Vna7.443 najverjetneje citoplazemski efektorski protein, ki se, v primeru ko je C-terminalni konec prost, lokalizira v jedro rastlinske celice, 2) ne sproži preobčuljivostnega odziva v modelni rastlini, 3) vsebuje osem tandemskih ponovitev WD40 in 4) ima ohranjene homologe znotraj rodov gliv Verticillium, Cercospora in Fusarium.

Language:Slovenian
Keywords:fitopatogene glive, hemibiotrof, Verticillium nonalfalfae, efektorski protein, verticilijska uvelost, hmelj, Vna7.443, WD40, tandemske ponovitve
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Place of publishing:Ljubljana
Publisher:[K. Dretnik]
Year:2022
PID:20.500.12556/RUL-136235 This link opens in a new window
UDC:632.4:633.791:601.4:577.21(043.2)
COBISS.SI-ID:104982275 This link opens in a new window
Publication date in RUL:21.04.2022
Views:922
Downloads:82
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Secondary language

Language:English
Title:Characterization of effector protein Vna7.443 of Verticillium nonalfalfae
Abstract:
Detection of candidate secreted effector proteins (CSEPs) function is key to understanding the interaction between phytopathogenic organisms and plant hosts. The hemibiotrophic phytopathogenic vascular wilt fungus Verticillium nonalfalfae, which primarily infects hops (Humulus lupulus L.), produces four known apoplastic effector proteins VnaPRX1.1277 (class II peroxidase), VnaSSP4.2, VnaUn.279 and VnaChtBP (chitin binding protein), however, it has no known cytoplasmic effector proteins. The aim of the master's thesis was to characterize the candidate secretory effector protein Vna7.443, selected on the basis of previous studies. Homologous proteins, potential target cell processes, and basic descriptive parameters were determined for the Vna7.443 protein by bioinformatics approaches. Subcellular localization of Vna7.443 fusion proteins with mRFP labeling at the C- and N-terminal end was performed by confocal microscopy on Agrobacterium tumefaciens-transformed Nicotiana benthamiana leaf sections. The results showed that Vna7.443 protein is likely a cytoplasmic effector protein that, when the C-terminal end is free, localizes to the plant cell nucleus, but does not trigger a hypersensitive response in planta. Vna7.443 contains eight tandem WD40 repeats and has preserved homologues within fungal genuses Verticillium, Cercospora and Fusarium.

Keywords:phytopathogenic fungi, hemibiotroph, verticillium wilt, Verticillium nonalfalfae, hop, effector protein, Vna7.443, WD40, tandem repeats

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