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2. The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classesMinna-Liisa Änkö, Michaela Müller-McNicoll, Holger Brandl, Tomaž Curk, Črtomir Gorup, Ian Henry, Jernej Ule, Karla M. Neugebauer, 2012, original scientific article Keywords: iCLIP, uravnavanje povezovanja, RNA tarče proteinov SRSF3 in SRSF4, iCLIP, splicing regulation, SRSF3 and SRSF4 RNA targets
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3. ICount - comprehensive analysis of iCLIP dataGregor Rot, Julian König, Črtomir Gorup, Blaž Zupan, Jernej Ule, Tomaž Curk, 2010, published scientific conference contribution abstract Keywords: CLIP posameznih nukleotidov, iCLIP, uravnavanje povezovanja, računski cevovod, individual-nucleotide CLIP, iCLIP, splicing regulation, computational pipeline
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4. IdiscoverTomaž Curk, Črtomir Gorup, Gregor Rot, Jernej Ule, Blaž Zupan, 2011, published scientific conference contribution abstract Keywords: CLIP posameznih nukleotidov, iCLIP, uravnavanje povezovanja, računski cevovod, rangiranje značilk, individual-nucleotide CLIP, iCLIP, splicing regulation, computational pipeline, feature ranking
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5. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactionsYoichiro Sugimoto, Julian König, Shobbir Hussain, Blaž Zupan, Tomaž Curk, Michaela Frye, Jernej Ule, 2012, original scientific article Keywords: CLIP, iCLIP, interakcije protein-RNA, CLIP, iCLIP, protein-RNA interactions
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6. CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic functionJacy L. Wagnon, Michael Briese, Wenzhi Sun, Connie L. Mahaffey, Tomaž Curk, Gregor Rot, Jernej Ule, Ingrid Ehrmann, Wayne N. Frankel, 2012, original scientific article Keywords: CELF4, CLIP, iCLIP, interakcije protein-RNA, CELF4, CLIP, iCLIP, protein-RNA interactions
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8. Promiscuous RNA binding ensures effective encapsidation of APOBEC3 proteins by HIV-1Tomaž Curk, Jernej Ule, Luis Apolonia, Reiner Schulz, Ana Paula Rocha, Chad M. Swanson, Torsten Schaller, Michael H. Malim, 2015, original scientific article Keywords: APOBEC3, interakcije RNA protein, iCLIP, HIV-1, APOBEC3, RNA protein interactions, iCLIP, HIV-1
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9. Aubergine iCLIP reveals piRNA-dependent decay of mRNAs involved in germ cell development in the early embryoTomaž Curk, Bridlin Barckmann, Stephanie Pierson, Jérémy Dufourt, Catherine Papin, Claudia Armenise, Fillip Port, Thomas Grentzinger, Séverine Chambeyron, Grégory Baronian, Jean-Pierre Desvignes, Martine Simonelig, 2015, original scientific article Keywords: interakcije RNA-protein, iCLIP, Aubergine, vinska mušica Drosophila, melanogaster, RNA-protein interactions, iCLIP, Aubergine, fruit fly Drosophila melanogaster
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10. Unravelling the RNA-binding properties of SAFB proteins in breast cancer cellsAndrew Best, Tomaž Curk, Elaine Hong, Hannah Gautrey, Jas Chin, Anshuli Razdan, David J. Elliott, Alison J. Tyson-Capper, 2015, original scientific article Keywords: interakcije RNA-protein, iCLIP, SAFB, rak dojke, celice MCF-7, RNA-protein interactions, iCLIP, SAFB, breast cancer, MCF-7 cells
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