1. Lipid-binding aegerolysin from biocontrol fungus Beauveria bassianaNada Kraševec, Anastasija Panevska, Špela Lemež, Jaka Razinger, Kristina Sepčić, Gregor Anderluh, Marjetka Podobnik, 2021, original scientific article Keywords: beauveriolysin, membrane-attack-complex/perforin (MACPF) protein, pore-forming proteins, entomopathogenic and antagonistic fungi, bioinformatics, ceramide phosphoethanolamine (CPE), lipid binding
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2. Protein gas vesicles of Bacillus megaterium as enhancers of ultrasound-induced transcriptional regulationVid Jazbec, Nina Varda, Ernest Šprager, Maja Meško, Sara Vidmar, Rok Romih, Marjetka Podobnik, Andreja Kežar, Roman Jerala, Mojca Benčina, 2024, original scientific article Keywords: protein gas vesicles, gas vesicle proteins, transcription, ultrasound, sonogenetics, bacteria, cells, cluster chemistry, peptides, proteins
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3. Izolacija, biokemijska karakterizacija ter kristalizacija univerzalnega stresnega proteina iz Mycobacterium smegmatisOmar Naneh, 2011, undergraduate thesis Keywords: proteomika, izolacija proteinov, univerzalni stresni proteini, USP, Msmeg_4207, mikobakterije, Mycobacterium smegmatis, tuberkuloza, biokemijska karakterizacija, karakterizacija proteinov, acetilacija, kristalografija, cAMP
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4. Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamineEva Kočar, Tea Lenarčič, Vesna Hodnik, Anastasija Panevska, Yunjie Huang, Gregor Bajc, Rok Kostanjšek, Anjaparavanda P. Naren, Peter Maček, Gregor Anderluh, Kristina Sepčić, Marjetka Podobnik, Matej Butala, 2021, original scientific article Keywords: aegerolysins, crystal structure of RahU, ceramide phosphorylethanolamine, biochemistry, lipids, membrane lipids, membrane proteins, microbiology, proteins, sphingolipids, structural biology, X-ray crystallography
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5. Ultrastructure and stability of cellular nanoparticles isolated from Phaeodactylum tricornutum and Dunaliella tertiolecta conditioned mediaDarja Božič, Matej Hočevar, Marko Jeran, Matic Kisovec, Apolonija Bedina Zavec, Anna Romolo, David Škufca, Marjetka Podobnik, Ksenija Kogej, Aleš Iglič, Nicolas Touzet, Mauro Manno, Gabriella Pocsfalvi, Antonella Bongiovanni, Veronika Kralj-Iglič, 2022, original scientific article Keywords: nanoalgosomes, extracellular vesicles, small cellular particles, cellular nanoparticles, exosomes, electron microscopy of extracellular vesicles, characterization of extracellular vesicles, microalgae
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6. Assessment of small cellular particles from four different natural sources and liposomes by interferometric light microscopyAnna Romolo, Zala Jan, Apolonija Bedina Zavec, Matic Kisovec, Vesna Arrigler, Vesna Spasovski, Marjetka Podobnik, Aleš Iglič, Gabriella Pocsfalvi, Ksenija Kogej, Veronika Kralj-Iglič, 2022, original scientific article Keywords: interferometric light microscopy, interferometric nanotracking analysis, nanoparticle tracking analysis, concentration of extracellular particles, size of extracellular particles, dynamic light scattering, hydrodynamic radius of extracellular particles, extracellular vesicles, liposomes, exosomes
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7. Stability of erythrocyte-derived nanovesicles assessed by light scattering and electron microscopyDarja Božič, Matej Hočevar, Matic Kisovec, Manca Pajnič, Ljubiša Pađen, Marko Jeran, Apolonija Bedina Zavec, Marjetka Podobnik, Ksenija Kogej, Aleš Iglič, Veronika Kralj-Iglič, 2021, original scientific article Keywords: light scattering, vesicle characterization, vesicle stability, extracellular vesicle reference material, nanovesicles, cellular vesicles, vesicle shape, scanning electron microscopy of extracellular vesicles, cryo-electron microscopy of extracellular vesicles
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8. Mehanizem tvorbe por listeriolizina O iz Listeria monocytogenes in perforinu podobnega proteina 3 iz Plasmodium falciparumMatic Kisovec, 2017, doctoral dissertation Keywords: biokemija, bakterijski toksini, citotoksični proteini ki tvorijo pore, listeria monocytogenes, plasmodium falciparum, protozojski proteini, celična membrana, molekularni modeli, proteinski inženiring
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9. Cytotoxic activity of LLO Y406A is targeted to the plasma membrane of cancer urothelial cellsNataša Resnik, Larisa Tratnjek, Mateja Erdani-Kreft, Matic Kisovec, Saša Aden, Apolonija Bedina Zavec, Gregor Anderluh, Marjetka Podobnik, Peter Veranič, 2021, original scientific article Keywords: bladder cancer, cancer urothelial cells, normal urothelial cells, listeriolysin O, blebbing, calcium influx, pore-forming toxin, cytolysin, cytotoxicity
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10. Identification of tomato infecting viruses that co-isolate with nanovesicles using a combined proteomics and electron-microscopic approachRamila Mammadova, Immacolata Fiume, Ramesh Bokka, Veronika Kralj-Iglič, Darja Božič, Matic Kisovec, Marjetka Podobnik, Apolonija Bedina Zavec, Matej Hočevar, Gabriella Gellén, Gitta Schlosser, Gabriella Pocsfalvi, 2021, original scientific article Keywords: tomato, plant viruses, tomato brown rugose fruit virus, tomato mosaic virus, tomato spotted wilt virus, extracellular vesicles, capsid protein
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