1. Staphylococcus pseudintermedius septicemia in puppies after elective cesarean sectionMaja Zakošek, Tanja Švara, Irena Zdovc, Bojan Papić, Jana Avberšek, Darja Kušar, Janko Mrkun, 2019, original scientific article Keywords: staphylococcal infections, whole genome sequencing, milk, dogs
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2. Clonal spread of pESI-positive multidrug-resistant ST32 Salmonella enterica serovar Infantis isolates among broilers and humans in SloveniaBojan Papić, Darja Kušar, Jasna Mićunović, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2022, original scientific article Keywords: Salmonella Infantis, ST32, pESI, multidrug resistance, broilers, humans
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3. Novel TaqMan PCR assay for the quantification of Paenibacillus larvae spores in bee-related samplesDarja Kušar, Bojan Papić, Urška Zajc, Irena Zdovc, Majda Golob, Lucija Žvokelj, Tanja Knific, Jana Avberšek, Matjaž Ocepek, Metka Pislak, 2021, original scientific article Keywords: American foulbrood (AFB), Paenibacillus larvae, real-time or quantitative PCR (qPCR), digital PCR (dPCR), plate counting, spore germination rate, honey, hive debris, Polymerase Chain Reaction
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4. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmissionBojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, original scientific article Keywords: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation
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5. Antimicrobial and antibiofilm effect of commonly used disinfectants on Salmonella Infantis isolatesKatja Bezek, Jana Avberšek, Olga Zorman-Rojs, Darja Barlič-Maganja, 2023, original scientific article Keywords: Salmonella Infantis, biofilm, antibiofilm, disinfectants
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6. Genomic insights into the emergence and spread of methicillin-resistant Staphylococcus pseudintermedius in veterinary clinicsBojan Papić, Majda Golob, Irena Zdovc, Darja Kušar, Jana Avberšek, 2021, original scientific article Keywords: antimicrobial susceptibility testing, epidemiology, methicillin-resistant Staphylococcus pseudintermedius (MRSP), small animal clinic, whole-genome sequencing (WGS)
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7. ERIC and WGS typing of Paenibacillus larvae in SloveniaAlenka Žugelj, Bojan Papić, Irena Zdovc, Urška Zajc, Majda Golob, Jana Avberšek, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
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8. Feline otitis externa caused by methicillin-resistant Staphylococcus aureus with mixed hemolytic phenotype and overview of possible genetic backgroundsJana Avberšek, Bojan Papić, Darja Kušar, Vladimira Erjavec, Katja Seme, Majda Golob, Irena Zdovc, 2021, original scientific article Keywords: methicillin-resistant Staphylococcus aureus (MRSA), otitis externa, cat, whole-genome sequencing (WGS), mixed hemolysis, genetics, microbiology
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9. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operationBojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood, AFB, whole-genome sequencing, WGS, whole-genome multilocus sequence typing, wgMLST, outbreak, beekeeping operation, molecular sequence data, genotype
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10. Antimicrobial resistance and molecular characterization of methicillin-resistant Staphylococcus aureus from two pig farmsMajda Golob, Mateja Pate, Darja Kušar, Urška Zajc, Bojan Papić, Matjaž Ocepek, Irena Zdovc, Jana Avberšek, 2022, original scientific article Keywords: livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA), pigs, multidrug resistance (MDR), spa typing, longitudinal study
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