1. Gene expression profiling of recombinant protein producing E. coli at suboptimal growth temperatureMitja Mahnič, Špela Baebler, Andrej Blejec, Špela Jalen, Kristina Gruden, Viktor Menart, Simona Jevševar, 2012, original scientific article Keywords: recombinant protein production, non-classical inclusion bodies, expression microarrays, YaeL protease, GroEL chaperone
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3. Differential role of cathepsins B and L in autophagy-associated cell death induced by arsenic trioxide in U87 human glioblastoma cellsAnja Pucer, Bojana Mirković, Ingrid Falnoga, Zdenka Šlejkovec, Ciro Isidoro, Tamara Lah Turnšek, 2010, original scientific article Keywords: apoptosis, arsenite, autophagy, cancer, cysteine cathepsins, protease inhibition
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5. ComX-induced exoproteases degrade ComX in Bacillus subtilis PS-216Mihael Špacapan, Tjaša Danevčič, Ines Mandić-Mulec, 2018, original scientific article Keywords: cell signaling, protease, quorum quenching, biofilms, degradative enzymes, quorum sensing, auto inducing signal, pellicles
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6. Mechanistic insights into CrCEP1Katarina Petra Van Midden, Melissa Mantz, Marko Fonović, Martin Gazvoda, Jurij Svete, Pitter F. Huesgen, Renier A. L. van der Hoorn, Marina Klemenčič, 2024, original scientific article Keywords: proteolysis, activity-based probes, papain-like cysteine protease, transpeptidation, green algae
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7. 3,1-Benzothiazines, 1,4-benzodioxines, 1,4-benzoxazines as inhibitors of matriptase-2Polya G. Roydeva, Anna-Madeleine Beckmann, Marit Stirnberg, Jožko Cesar, Danijel Kikelj, Janez Ilaš, Michael Gütschow, 2016, original scientific article Keywords: marine alkaloid, Agelas, clathrodin, oroidin, pyrrole-2-aminoimidazole, antibacterial, benzamidines, 4H-3, 1-benzothiazin-4-ones, 2, 3-dihydro-1, 4-benzodioxines, 3, 4-dihydro-2H-1, 4-benzoxazines, matriptase-2, protease inhibition
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8. Stress-tolerant yeastsJanja Zajc, Cene Gostinčar, Anja Černoša, Nina Gunde-Cimerman, 2019, original scientific article Keywords: opportunistic pathogen, biocontrol agent, virulence, stress tolerance, secretome, CAZy, protease, thermotolerance, oligotrophism, melanin, siderophore, biofilm
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9. Inhibition of the SARS-CoV-2 3CL$^{pro}$ main protease by plant polyphenolsMiha Bahun, Marko Jukič, Domen Oblak, Luka Kranjc, Gregor Bajc, Matej Butala, Krištof Bozovičar, Tomaž Bratkovič, Črtomir Podlipnik, Nataša Poklar Ulrih, 2022, original scientific article Keywords: edible plants, polyphenols, COVID-19, SARS-CoV-2, 3CL$^{pro}$, protease inhibitor
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10. Prioritisation of compounds for 3CL$^{pro}$ inhibitor development on SARS-CoV-2 variantsMarko Jukič, Blaž Škrlj, Gašper Tomšič, Sebastian Pleško, Črtomir Podlipnik, Urban Bren, 2021, original scientific article Keywords: COVID-19, SARS-CoV-2, free-energy calculations, in silico drug design, virtual screening, inhibitors, 3C-like protease, M$^{pro}$, 3CL$^{pro}$, high-throughput, chemical library design, machine learning, compound prioritisation
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