1. A molecular survey, whole genome sequencing and phylogenetic analysis of astroviruses from roe deerUrška Jamnikar Ciglenečki, Vita Čivnik, Andrej Kirbiš, Urška Kuhar, 2020, original scientific article Keywords: astrovirus, Mamastrovirus, roe deer, phylogenetic analysis, wildlife, next generation sequencing, taxonomic classification
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2. First report of Phodopus sungorus papillomavirus type 1 infection in Roborovski hamsters (Phodopus roborovskii)G. Gimpelj Domjanič, Lea Hošnjak, Maja M. Lunar, Lucijan Skubic, Tomaž Mark Zorec, Joško Račnik, Blaž Cigler, Mario Poljak, 2021, original scientific article Keywords: papillomavirus, Phodopus sungorus papillomavirus type 1 (PsuPV1), Phodopus roborovskii, molecular analysis, phylogenetic analysis, evolution, viral cross-species transmission, Papillomaviridae, Phodopus, phylogeny
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4. Molecular and epidemiological characterisation of the novel mammalian orthoreovirus variantsTina Mikuletič, 2021, doctoral dissertation Keywords: mammalian orthoreovirus, bat, RT-PCR, real-time RT-PCR, next-generation sequencing, phylogenetic analysis, serum-neutralisation test, virus isolation, cell culture
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5. Molecular and phylogenetic characterization of novel papillomaviruses isolated from oral and anogenital neoplasms of Japanese macaques (Macaca fuscata)Lucijan Skubic, Lea Hošnjak, Jeannette P. Staheli, Michael R. Dyen, Rebecca M. Ducore, Lois M. A. Colgin, Anne D. Lewis, Mario Poljak, 2021, original scientific article Keywords: papillomavirus, Macaca fuscata, molecular analysis, Alphapapillomavirus, phylogenetic analysis, viral load
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6. Discovery of a novel bat lyssavirus in a long-fingered bat (Myotis capaccinii) from SloveniaDanijela Černe, Peter Hostnik, Ivan Toplak, Primož Presetnik, Jedrt Maurer Wernig, Urška Kuhar, 2023, original scientific article Keywords: real-time polymerase chain reaction, lyssaviruses, bats, rabies virus, phylogenetic analysis, Europe, zoonoses, nucleotides, species delimitation
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7. Genomic revelationsPetra Šenica Kavčič, Diana Žele-Vengušt, Gorazd Vengušt, Urška Kuhar, 2024, original scientific article Keywords: rotaviruses, wild ruminants, zoonotic potential, phylogenetic analysis, genomic diversity, cross-species infection, zoonoses, wild animals
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8. A new perspective on the molecular dating of the brown trout complex with an extended phylogeographic information on the species in SerbiaTijana Veličković, Aleš Snoj, Vladica Simić, Radek Šanda, Jasna Vukić, Dovilė Barcytė, David Stanković, Saša Marić, 2023, original scientific article Keywords: brown trout, phylogeography, Pleistocene, Pliocene, calibrated phylogenetic analysis, Danubian brown trout lineage, Salmo spp., time-calibrated phylogeny
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