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1. ERIC and WGS typing of Paenibacillus larvae in Slovenia
Alenka Žugelj, Bojan Papić, Irena Zdovc, Urška Zajc, Majda Golob, Jana Avberšek, Darja Kušar, 2021, original scientific article

Keywords: Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
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2. Retrospective investigation of listeriosis outbreaks in small ruminants using different analytical approaches for whole genome sequencing-based typing of Listeria monocytogenes
Bojan Papić, Darja Kušar, Irena Zdovc, Majda Golob, Mateja Pate, 2020, original scientific article

Keywords: epidemiology, veterinary, Listeria monocytogenes, outbreak, whole-genome sequencine, single nucleotide polymorphism, multilocus sequence typing, sheep, goats
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3. Comparison of selected methods in bacteriological diagnostics and their use in bacterial typing
Katarina Benulič, 2020, doctoral dissertation

Keywords: 16S rDNA PCR, real-time PCR, bacteria, syndromic testing, cultivation, ventilator-associated pneumonia, meningitis, arthritis, Klebsiella pneumoniae, whole-genome sequencing, WGS, NGS, resistance, carbapenemase, OXA-48, NDM, outbreak
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4. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmission
Bojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, original scientific article

Keywords: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation
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5. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operation
Bojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, original scientific article

Keywords: Paenibacillus larvae, American foulbrood (AFB), whole-genome sequencing (WGS), whole-genome multilocus sequence typing (wgMLST), outbreak, beekeeping operatio
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