1. Computational approaches for gene network discoveryTomaž Curk, 2007, doctoral dissertation Keywords: machine learning, bioinformatics, visualization, rule-based clustering, gene networks, functional genomics, modeling regulation of gene expression, decomposition of gene expression profile signatures, dissertations
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2. Artificial intelligence methods for discovery of relationships in genetic dataPeter Juvan, 2005, doctoral dissertation Keywords: artificial intelligence, abduction, qualitative reasoning, qualitative genetic network, bioinformatics, functional genomics, epistasis analysis, statistical inference, hypothesis testing
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3. Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasionKristina Marton, Marko Flajšman, Sebastjan Radišek, Katarina Košmelj, Jernej Jakše, Branka Javornik, Sabina Berne, 2018, original scientific article Keywords: plant fungal pathogens, protein domains, Verticillium, fungal genomics, fungal genetics, proteases, plant pathogens, gene expression
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4. Milk production in the post-genomic eraPolona Frajman, Peter Dovč, 2004, review article Keywords: milk production, technological properties, lactoproteins, molecular genetics, quantitative trait loci, QTL, genomics, micro array
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5. Mechanism of azole resistance in Candida glabrata in the presence of immunosuppressant mycophenolic acidMiha Tome, 2018, doctoral dissertation Keywords: Candida glabrata, drug resistance, mechanism of drug resistance, drug combinations, immunosuppressive drugs, antifungals, azoles, functional genomics, fluconazole, mycophenolic acid, Saccharomyces cerevisiae
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7. Genomic evidence of recombination in the basidiomycete Wallemia mellicolaXiaohuan Sun, Cene Gostinčar, Chao Fang, Janja Zajc, Yong Hou, Zewei Song, Nina Gunde-Cimerman, 2019, original scientific article Keywords: population genomics, halotolerance, xerotolerance, basidiomycete, allergenic fungus, recombination
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8. Population genomics of an obligately halophilic basidiomycete Wallemia ichthyophagaCene Gostinčar, Xiaohuan Sun, Janja Zajc, Chao Fang, Yong Hou, Yonglun Luo, Nina Gunde-Cimerman, Zewei Song, 2019, original scientific article Keywords: population genomics, halotolerance, halophilic fungus, basidiomycete, specialist, recombination
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9. Biomarkers of Fabry nephropathyTina Levstek, Bojan Vujkovac, Katarina Trebušak Podkrajšek, 2020, review article Keywords: Fabry nephropathy, biomarkers, genomics, Fabry disease, nephropathy, epigenomics, metabolomics, proteomics, transcriptomics
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10. Shed light in The daRk lineagES of the fungal tree of life—STRESLaura Selbmann, Nina Gunde-Cimerman, Monika Novak Babič, Polona Zalar, Jason Eric Stajich, 2020, other scientific articles Keywords: adaptation, black fungi, Dothideomycetes, Eurotiomycetes, extremophiles, genomics, metabolomics, secondary metabolites, stress conditions, transcriptomics
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